BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0240.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase [He...   207   5e-55
gi|300311033|ref|YP_003775125.1| chemotaxis histidine kinase [He...    64   5e-12
gi|300312286|ref|YP_003776378.1| signal-transducing histidine ki...    61   4e-11
gi|300312396|ref|YP_003776488.1| chemotaxis CheA protein [Herbas...    57   9e-10

>gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 725

 Score =  207 bits (526), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 105/128 (82%), Positives = 114/128 (89%)

Query: 1   MKKDSARDAVVQEARELLVAMEAALLQIEMEGPSRDSINAIFRAAHTIKGSAGLFAFDSI 60
           M KDSAR A+VQEARELLVAMEAALLQ EMEGPSRDSI+AIFRAAHTIKGSAGLFAFDSI
Sbjct: 1   MSKDSARHAMVQEARELLVAMEAALLQTEMEGPSRDSIHAIFRAAHTIKGSAGLFAFDSI 60

Query: 61  VQFTHQVEHVLDLVREERLPLNAPMMSLLLQCGDYVSDLVDAIERNQEAEEPNAERRATL 120
           VQFTH +EHVL+ VREERL L++ +MSLLLQC DY+ +LVDAIER QEAEEPNAERRA L
Sbjct: 61  VQFTHHLEHVLERVREERLALDSHLMSLLLQCSDYIGELVDAIERGQEAEEPNAERRAAL 120

Query: 121 LAALAEVA 128
           LA L  VA
Sbjct: 121 LAELDAVA 128


>gi|300311033|ref|YP_003775125.1| chemotaxis histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 837

 Score = 64.3 bits (155), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 65/121 (53%)

Query: 7   RDAVVQEARELLVAMEAALLQIEMEGPSRDSINAIFRAAHTIKGSAGLFAFDSIVQFTHQ 66
           RD  + E R+LL  +   L+Q+E      + + ++FR  HT+KG++GLF    + +  H 
Sbjct: 5   RDQFILETRDLLQGISEKLMQLEDAPEHVELLESLFRMVHTLKGNSGLFDVPEMTRVLHA 64

Query: 67  VEHVLDLVREERLPLNAPMMSLLLQCGDYVSDLVDAIERNQEAEEPNAERRATLLAALAE 126
            E ++D VR  ++  +  +   LL   D+V+ L D +E   E  +P+A+    + ++L +
Sbjct: 65  CEDLMDAVRRRQVAYSEVLADRLLDAMDFVAMLCDGLEMEAEQADPHAQEAVQIASSLRQ 124

Query: 127 V 127
           +
Sbjct: 125 L 125


>gi|300312286|ref|YP_003776378.1| signal-transducing histidine
           kinase CheA protein [Herbaspirillum seropedicae SmR1]
          Length = 697

 Score = 61.2 bits (147), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 56/106 (52%)

Query: 21  MEAALLQIEMEGPSRDSINAIFRAAHTIKGSAGLFAFDSIVQFTHQVEHVLDLVREERLP 80
           ME  LL + +  P  + +NA+FRAAH+IKG +  F    I + TH +E +LD +R+ ++ 
Sbjct: 1   MEKLLLAVNVASPDPEDLNAVFRAAHSIKGGSSTFGLTDIAEVTHVLESLLDRIRQGQMA 60

Query: 81  LNAPMMSLLLQCGDYVSDLVDAIERNQEAEEPNAERRATLLAALAE 126
           L +  +   L   D +  ++D  +   + ++        LL AL++
Sbjct: 61  LTSEHVDAFLAAKDVLKSMLDGHKHGADVDQGAVADVRRLLEALSQ 106


>gi|300312396|ref|YP_003776488.1| chemotaxis CheA protein
          [Herbaspirillum seropedicae SmR1]
          Length = 638

 Score = 57.0 bits (136), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 1  MKKDSARDAVVQEARELLVAMEAALLQIEMEGPSRDSINAIFRAAHTIKGSAGLFAFDSI 60
          M  +  +D VV EA EL   +E  LL +E      + +NA+FRA HTIKG AG     ++
Sbjct: 1  MDDEMLKDFVV-EALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAM 59

Query: 61 VQFTHQVEHVLDLVREERLPLNAPMMSLLLQCGDYVSD 98
          V   H  E++ D +R  + P+    +   LQ   +V+D
Sbjct: 60 VSACHLTENLFDALRTGKAPVTPLAIEAALQASGFVAD 97


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 319,550
Number of extensions: 10283
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 5
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)