BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0237.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310517|ref|YP_003774609.1| DNA repair RadC-like protein [H...   317   7e-88

>gi|300310517|ref|YP_003774609.1| DNA repair RadC-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  317 bits (811), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 147/224 (65%), Positives = 182/224 (81%)

Query: 3   MSIVDWPAAQRPRERLLELGPACLSDAELLAIFLRVGTPGKSVMELAMDLLHRFGSLEGL 62
           M I DWP  QRPRER+ + GPA LSDAELLAIFLRVG PGK+ +ELA + + RFGSL+G+
Sbjct: 1   MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60

Query: 63  CKAVQREPSLGNGLGPAKCAQLSASLELAKRAIHSDLKQASALNSTRVVGEYLKLTFFGK 122
             AV+R+  LG GLGPA C QL A LE+++RAIH+ ++Q   LNSTR VG+YLKL    +
Sbjct: 61  LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRQRELLNSTRAVGDYLKLMLAHR 120

Query: 123 EHECFVALFLNMRNNLLGTEELFRGSLNQTTVHPREVVKMALRYNAASVIVAHNHPSGDP 182
           E ECFVALFL++RN L+GTEELF+G+L Q+ V+PREV+K ALR+NAASVI+AHNHPSGDP
Sbjct: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180

Query: 183 RPSDSDLRLTKTLKQALELIEVELLDHIVVAGTRLYSFADHGKV 226
            PSD DLRLT  L +AL+++++ LLDH VVAGTRLYSFADHGK+
Sbjct: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 660,304
Number of extensions: 25131
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)