BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0232.p
         (87 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310522|ref|YP_003774614.1| branched-chain amino acid ABC t...   135   9e-34
gi|300309520|ref|YP_003773612.1| branched-chain amino acid ABC t...   134   1e-33
gi|300310993|ref|YP_003775085.1| branched-chain amino acid ABC t...    69   7e-14

>gi|300310522|ref|YP_003774614.1| branched-chain amino acid ABC
          transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 404

 Score =  135 bits (339), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 71/82 (86%), Positives = 77/82 (93%)

Query: 1  MALMTFDMKRNPQQARFSLLALLALMIIFPMIAQHFGNSWVRIMDMALLYIMLALGLNVV 60
          MAL+TFDMKRNPQQAR SLL LLALMI+FP +AQ FGNSWVRIMD+ALLYIMLALGLNVV
Sbjct: 1  MALLTFDMKRNPQQARISLLLLLALMIVFPFVAQQFGNSWVRIMDVALLYIMLALGLNVV 60

Query: 61 VGFAGLLDLGYIAFYAIGATAS 82
          VGFAGLLDLGYIAFYAIGA ++
Sbjct: 61 VGFAGLLDLGYIAFYAIGAYSA 82


>gi|300309520|ref|YP_003773612.1| branched-chain amino acid ABC
          transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 404

 Score =  134 bits (338), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/82 (86%), Positives = 77/82 (93%)

Query: 1  MALMTFDMKRNPQQARFSLLALLALMIIFPMIAQHFGNSWVRIMDMALLYIMLALGLNVV 60
          MAL+TFDMKRNPQQAR SLL LLALMI+FP +AQ FGNSWVRIMD+ALLYIMLALGLNVV
Sbjct: 1  MALLTFDMKRNPQQARISLLLLLALMIVFPFVAQQFGNSWVRIMDVALLYIMLALGLNVV 60

Query: 61 VGFAGLLDLGYIAFYAIGATAS 82
          VGFAGLLDLGYIAFYAIGA ++
Sbjct: 61 VGFAGLLDLGYIAFYAIGAYSA 82


>gi|300310993|ref|YP_003775085.1| branched-chain amino acid ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 408

 Score = 68.9 bits (167), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 53/77 (68%), Gaps = 4/77 (5%)

Query: 9   KRNPQQARFSLLALLALMIIFPMIAQHFGNSWVRIMDMALLYIMLALGLNVVVGFAGLLD 68
           +  P+Q R +++ LL   +++P         +V +M +AL+Y++L LGLN+VVGFAGLLD
Sbjct: 74  RMQPRQQRAAVMILLMAALVWPFFGSR---GYVDVMTLALIYVVLGLGLNIVVGFAGLLD 130

Query: 69  LGYIAFYAIGA-TASTC 84
           LGY+ FYA+GA T + C
Sbjct: 131 LGYVGFYAVGAYTYALC 147


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.336    0.145    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 247,224
Number of extensions: 8341
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 3
Length of query: 87
Length of database: 1,619,870
Length adjustment: 57
Effective length of query: 30
Effective length of database: 1,349,975
Effective search space: 40499250
Effective search space used: 40499250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 123 (52.0 bits)