BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0231.p (282 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309520|ref|YP_003773612.1| branched-chain amino acid ABC t... 536 e-154 gi|300310522|ref|YP_003774614.1| branched-chain amino acid ABC t... 513 e-147 gi|300310993|ref|YP_003775085.1| branched-chain amino acid ABC t... 217 8e-58 gi|300312238|ref|YP_003776330.1| amino acid ABC transporter perm... 120 1e-28 gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t... 111 6e-26 >gi|300309520|ref|YP_003773612.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 404 Score = 536 bits (1381), Expect = e-154, Method: Compositional matrix adjust. Identities = 268/282 (95%), Positives = 277/282 (98%) Query: 1 LSLWLIVPISGVLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNG 60 LSLWLIVPIS LAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNG Sbjct: 123 LSLWLIVPISAFLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNG 182 Query: 61 PQGINLIDPIRVFGVSLAGEPGSGSMLKVFGMNLPSVNAYYYLFLVLCIFVIFFSSRLQD 120 PQGINLIDPI+VFGVSLAGEPGSGSM+KVFGM++PSVNAYY+LFL+LCI VIFFS RLQD Sbjct: 183 PQGINLIDPIKVFGVSLAGEPGSGSMVKVFGMSMPSVNAYYFLFLLLCIGVIFFSVRLQD 242 Query: 121 SRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSL 180 SRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSL Sbjct: 243 SRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSL 302 Query: 181 TESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQMAIFGKVWIDAEVLRQL 240 TESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEP+QMAIFGKVWIDAEVLRQL Sbjct: 303 TESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQMAIFGKVWIDAEVLRQL 362 Query: 241 LYGLAMVIIMLTRPAGLWPSPRHEDRPEVDHTKVGTTGEVKA 282 LYGLAMV+IMLTRPAGLWPSPRHEDRPE DHT+VGTTGEVKA Sbjct: 363 LYGLAMVVIMLTRPAGLWPSPRHEDRPEADHTQVGTTGEVKA 404 >gi|300310522|ref|YP_003774614.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 404 Score = 513 bits (1321), Expect = e-147, Method: Compositional matrix adjust. Identities = 268/282 (95%), Positives = 278/282 (98%) Query: 1 LSLWLIVPISGVLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNG 60 LSLWLIVPIS +LAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNG Sbjct: 123 LSLWLIVPISALLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNG 182 Query: 61 PQGINLIDPIRVFGVSLAGEPGSGSMLKVFGMNLPSVNAYYYLFLVLCIFVIFFSSRLQD 120 PQGINLIDPI+VFGVSLAGEPGSGSM+KVFGM++PSVNAYY+LFL+LCI VIFFS RLQD Sbjct: 183 PQGINLIDPIKVFGVSLAGEPGSGSMVKVFGMSMPSVNAYYFLFLLLCIGVIFFSVRLQD 242 Query: 121 SRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSL 180 SRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSL Sbjct: 243 SRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSL 302 Query: 181 TESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQMAIFGKVWIDAEVLRQL 240 TESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEP+QMAIFGKVWIDAEVLRQL Sbjct: 303 TESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQMAIFGKVWIDAEVLRQL 362 Query: 241 LYGLAMVIIMLTRPAGLWPSPRHEDRPEVDHTKVGTTGEVKA 282 LYGLAMV+IMLTRPAGLWPSPRHEDRPE DHT+VGTTGEVKA Sbjct: 363 LYGLAMVVIMLTRPAGLWPSPRHEDRPEADHTQVGTTGEVKA 404 >gi|300310993|ref|YP_003775085.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 408 Score = 217 bits (553), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 124/275 (45%), Positives = 173/275 (62%), Gaps = 26/275 (9%) Query: 1 LSLWLIVPISGVLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNG 60 L+ W VP++ +ALFG LLG P L+LRGDYLAIVTLGFGEIIR+ +NN+ +IT G Sbjct: 153 LTFWECVPLAAAASALFGFLLGFPVLRLRGDYLAIVTLGFGEIIRLLLNNMT---SITGG 209 Query: 61 PQGINLIDPIRVFGVSLAGEP---GSGSMLKVFGMNLPS---VNAYYYLFLVLCIFVIFF 114 P G++ I VFG+ +A P G + ++FG++ V Y+L L++ +F F Sbjct: 210 PDGVSGIPKPTVFGLVMARNPVTEGGTTFHQLFGLSYQGGHMVIFLYFLALLMVLFTYFV 269 Query: 115 SSRLQDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVS 174 +SRL +GRAW A+REDEIA +++GIN VKL AF +GA+F G+AG+ F A QG V+ Sbjct: 270 TSRLLRMPMGRAWEALREDEIACRSLGINPTKVKLSAFTLGAAFAGLAGSFFAARQGLVT 329 Query: 175 PESFSLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQMAIFGKVWIDA 234 PESF+ ES +LA+VVLGG+G GV+L ++L LPE+ R E Sbjct: 330 PESFTFIESALILAIVVLGGMGSQLGVILAAILLTVLPELARSFAE-------------- 375 Query: 235 EVLRQLLYGLAMVIIMLTRPAGLWPSPR-HEDRPE 268 R L++GL MV++M+ RP GL P+ R H + P+ Sbjct: 376 --YRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 >gi|300312238|ref|YP_003776330.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 126/218 (57%), Gaps = 33/218 (15%) Query: 11 GVLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQGINLIDPI 70 GVL AL ++G PTL+L G YLA+ TLGFGE++R+ + NL+ IT GP G+N Sbjct: 71 GVLPALVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLD----ITGGPMGLN----- 121 Query: 71 RVFGVSLAGEPGSGSMLKVFGMNLPSVNAYYYLFLVLCIFVIFFSSRLQDSRLGRAWVAI 130 +P + ++++ L+L + I+ +RL+ S++GRA+ AI Sbjct: 122 ----------------------GVPPITEWWHIVLLLGV-TIYVLARLRRSKIGRAFEAI 158 Query: 131 REDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSLTESIAVLAMV 190 +EDEIAA+ MG+N KLLAF +GA+ GVAG + F + P ++ ++ +L M Sbjct: 159 KEDEIAARLMGVNVAGYKLLAFVIGAAIAGVAGGLNAHFTFTIGPNNYGFENAVDILTMA 218 Query: 191 VLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQMAIFG 228 V GG ++ G ++G IL+ LPEVLRH + ++AI G Sbjct: 219 VFGGTSNLIGPMIGSTILSLLPEVLRH-FKDFRLAING 255 >gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 655 Score = 111 bits (278), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 22/225 (9%) Query: 1 LSLWLIVPISGVLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNG 60 + +++ VP + + A+FGA+L P L++ G YLA+VTL FG II+I +N + +T G Sbjct: 79 MPIFVTVPAAIAVTAVFGAILALPALRVTGPYLAMVTLAFGTIIQILINEMTF---LTEG 135 Query: 61 PQGINLIDPIRVFGVSLAGEPGSGSMLKVFGMNLPSVNAYYYLFLVLCIFVIFFSSRLQD 120 P GI L P+ G M +V ++YL VL + + R+ Sbjct: 136 PLGIKLQKPM----------IGGDKMSEV---------QFFYLVAVLMVLSMLVVHRILK 176 Query: 121 SRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSL 180 S LGRA+ A+R+ IA+ MG++ K+ AF + A+ G++GA++ + ++SP +++ Sbjct: 177 SNLGRAFQALRDSPIASDCMGVSVYRYKVYAFIISAALAGLSGALYAYSEEYISPNTYNF 236 Query: 181 TESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQMA 225 +I L V++GG G ++G +I+ LP +L + Q+A Sbjct: 237 ELTIMFLLAVIMGGRKSRIGSLIGALIVVMLPSLLSDIALFRQIA 281 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.143 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 773,479 Number of extensions: 28199 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 27 Length of query: 282 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 198 Effective length of database: 1,222,130 Effective search space: 241981740 Effective search space used: 241981740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)