BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0230.p (201 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 310 5e-86 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 309 1e-85 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 137 7e-34 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 135 2e-33 gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t... 133 8e-33 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 310 bits (794), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 151/158 (95%), Positives = 155/158 (98%), Gaps = 1/158 (0%) Query: 1 MTQTLLKIRDVSKRFGGLQALNGVGITIERGX-YGLIGPNGAGKTTFFNVITGLYQPDTG 59 M+QTLLKIRDVSKRFGGLQALNGVGITIERG YGLIGPNGAGKTTFFNVITGLYQPDTG Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 60 SFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 119 +FELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 Query: 120 KAARDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGD 157 KAAR+EEAAIR KSQ+LLDFVGIGQFAKRTARHLSYGD Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGD 158 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 309 bits (791), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 150/158 (94%), Positives = 155/158 (98%), Gaps = 1/158 (0%) Query: 1 MTQTLLKIRDVSKRFGGLQALNGVGITIERGX-YGLIGPNGAGKTTFFNVITGLYQPDTG 59 M+QTLLKIRDVSKRFGGLQALNGVGITIERG YGLIGPNGAGKTTFFNVITGLYQPDTG Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 60 SFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 119 +FELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRT+QNVFGAVFRH Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRH 120 Query: 120 KAARDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGD 157 KAAR+EEAAIR KSQ+LLDFVGIGQFAKRTARHLSYGD Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGD 158 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 137 bits (344), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 1/156 (0%) Query: 2 TQTLLKIRDVSKRFGGLQALNGVGITI-ERGXYGLIGPNGAGKTTFFNVITGLYQPDTGS 60 +T+L++ ++S RFGGL A++GV + + ER + +IGPNGAGKTT FN I+G Y+P +G Sbjct: 5 VKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGE 64 Query: 61 FELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHK 120 LDG + H+VA+ G+ RTFQNIRLF MTV+EN++V H + N+ + + Sbjct: 65 IMLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTP 124 Query: 121 AARDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYG 156 A R E ++ LD +G+ A R A LSYG Sbjct: 125 AYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYG 160 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 135 bits (340), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/154 (46%), Positives = 95/154 (61%), Gaps = 1/154 (0%) Query: 5 LLKIRDVSKRFGGLQALNGVGITIERGX-YGLIGPNGAGKTTFFNVITGLYQPDTGSFEL 63 LL++ D+SK FGGLQ L GV + +G +GLIGPNGAGKTT FN+ITGL + +GS Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 64 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAAR 123 + APH++ + GIARTFQNIR+F EMT+LENV+VG H V + R Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 124 DEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGD 157 + E R ++ +LL +V + A A LSYG+ Sbjct: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGE 155 >gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 655 Score = 133 bits (335), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 72/154 (46%), Positives = 99/154 (64%), Gaps = 1/154 (0%) Query: 4 TLLKIRDVSKRFGGLQALNGVGITIERG-XYGLIGPNGAGKTTFFNVITGLYQPDTGSFE 62 TLLK+ + +FGGL+ALN V + + +G +GLIGPNG+GK+T NV+TG+Y+P G E Sbjct: 391 TLLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVE 450 Query: 63 LDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAA 122 DG+P S + P +A G+ARTFQN++LFGEMT ENV+VG H NV + Sbjct: 451 YDGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMANTPRY 510 Query: 123 RDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYG 156 EE A R ++ +L+FVG+ A AR+L YG Sbjct: 511 VREEQAARERAAAILEFVGLANLANEEARNLPYG 544 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 618,761 Number of extensions: 26098 Number of successful extensions: 308 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 300 Number of HSP's successfully gapped: 61 Length of query: 201 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 120 Effective length of database: 1,236,335 Effective search space: 148360200 Effective search space used: 148360200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)