BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0229.p
         (88 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t...   154   1e-39
gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t...   154   1e-39
gi|300310683|ref|YP_003774775.1| amino acid ABC transporter comp...    92   9e-21
gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa...    87   2e-19
gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC t...    80   3e-17

>gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  154 bits (389), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/80 (96%), Positives = 78/80 (97%), Gaps = 1/80 (1%)

Query: 9   LDDPRAAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEG 68
           LD+P AAGMNATEKL LRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEG
Sbjct: 177 LDEP-AAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEG 235

Query: 69  VPADVQKNPAVIEAYLGAGH 88
           VPADVQKNPAVIEAYLGAGH
Sbjct: 236 VPADVQKNPAVIEAYLGAGH 255


>gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  154 bits (389), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/80 (96%), Positives = 78/80 (97%), Gaps = 1/80 (1%)

Query: 9   LDDPRAAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEG 68
           LD+P AAGMNATEKL LRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEG
Sbjct: 177 LDEP-AAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEG 235

Query: 69  VPADVQKNPAVIEAYLGAGH 88
           VPADVQKNPAVIEAYLGAGH
Sbjct: 236 VPADVQKNPAVIEAYLGAGH 255


>gi|300310683|ref|YP_003774775.1| amino acid ABC transporter
           composite ATP-binding protein/permease [Herbaspirillum
           seropedicae SmR1]
          Length = 627

 Score = 91.7 bits (226), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 61/78 (78%), Gaps = 1/78 (1%)

Query: 8   MLDDPRAAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAE 67
           +LD+P AAG+   EK AL ELL K++ EG  ILL+EHD+  +M L +RI V+D+G+ IAE
Sbjct: 524 LLDEP-AAGLRLGEKQALAELLRKLRGEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAE 582

Query: 68  GVPADVQKNPAVIEAYLG 85
           G+PAD+Q NPAV+EAYLG
Sbjct: 583 GLPADIQNNPAVLEAYLG 600


>gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 87.4 bits (215), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 8   MLDDPRAAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAE 67
           +LD+P  AGMN  EK  L   +V I+  G TI +IEHD++ +MGLC RI VL++GK IAE
Sbjct: 173 LLDEP-VAGMNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAE 231

Query: 68  GVPADVQKNPAVIEAYLG 85
           G P  ++ N  VIEAYLG
Sbjct: 232 GTPDQIKNNQEVIEAYLG 249


>gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC
           transporter ATP-binding protein/permease [Herbaspirillum
           seropedicae SmR1]
          Length = 596

 Score = 80.1 bits (196), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 1/81 (1%)

Query: 8   MLDDPRAAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAE 67
           +LD+P AAG+   EK AL  LL K++ EG  +LL+EHD+  +M L + I V+++G  IAE
Sbjct: 517 LLDEP-AAGLRLKEKEALAALLDKLRGEGMAVLLVEHDMDFVMQLTDHIVVMEFGAKIAE 575

Query: 68  GVPADVQKNPAVIEAYLGAGH 88
           G PA +Q +PAV+EAYLG   
Sbjct: 576 GTPAQIQVHPAVLEAYLGGAQ 596


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 280,799
Number of extensions: 9784
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 14
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 14
Length of query: 88
Length of database: 1,619,870
Length adjustment: 58
Effective length of query: 30
Effective length of database: 1,345,240
Effective search space: 40357200
Effective search space used: 40357200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)