BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0228.p (125 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 196 6e-52 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 196 6e-52 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 88 2e-19 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 88 2e-19 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 87 3e-19 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 196 bits (497), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 96/107 (89%), Positives = 103/107 (96%) Query: 1 MTTNILKVDQLSVAYGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITGTLPSSKV 60 MTTNILKV QLSVAYGGI+AVKGI LEVN+GELVTLIGANGAGKTTTLKAITGTLP+S+V Sbjct: 1 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60 Query: 61 DGHVYYMGNPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGA 107 +GH+ Y+G PLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGA Sbjct: 61 EGHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGA 107 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 196 bits (497), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 96/107 (89%), Positives = 103/107 (96%) Query: 1 MTTNILKVDQLSVAYGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITGTLPSSKV 60 MTTNILKV QLSVAYGGI+AVKGI LEVN+GELVTLIGANGAGKTTTLKAITGTLP+S+V Sbjct: 1 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60 Query: 61 DGHVYYMGNPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGA 107 +GH+ Y+G PLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGA Sbjct: 61 EGHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGA 107 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 88.2 bits (217), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 69/103 (66%), Gaps = 2/103 (1%) Query: 5 ILKVDQLSVAYGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITGTLPSSKVDGHV 64 IL+V+ + YG ++G+SL+V+ GE+VTL+G NGAGKTTTLK+I G +P V G V Sbjct: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPP--VQGRV 59 Query: 65 YYMGNPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGA 107 + G + G S+++ + +VPE RG+F ++++ENL M A Sbjct: 60 LFEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAA 102 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 87.8 bits (216), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 3/118 (2%) Query: 1 MTTNILKVDQLSVAYGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITGTLPSSKV 60 M +L+V LS AYG ++ + GI L V G++VT+IG NGAGKTT L AI G LPS Sbjct: 1 MGNKVLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPSR-- 58 Query: 61 DGHVYYMGNPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAGRPWRLHAHEH 118 G + + G + E+V + +VPE R +F M+I++NL++GA + +R +H Sbjct: 59 -GAMAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDH 115 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 87.4 bits (215), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 69/103 (66%), Gaps = 2/103 (1%) Query: 5 ILKVDQLSVAYGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITGTLPSSKVDGHV 64 IL+V+ L+VAYG I+AVKGISL +N+GE+ L+GANGAGK+T+L AI+G + + + G V Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQR--GRV 67 Query: 65 YYMGNPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGA 107 G L +V+ + V EGR T ++++ENL +GA Sbjct: 68 LLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGA 110 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 407,315 Number of extensions: 15818 Number of successful extensions: 238 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 224 Number of HSP's successfully gapped: 43 Length of query: 125 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 50 Effective length of database: 1,264,745 Effective search space: 63237250 Effective search space used: 63237250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 125 (52.8 bits)