BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0217.p (394 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309527|ref|YP_003773619.1| outer membrane protein (porin) ... 631 0.0 gi|300313580|ref|YP_003777672.1| outer membrane porin [Herbaspir... 528 e-151 gi|300310328|ref|YP_003774420.1| porin signal peptide protein [H... 285 5e-78 gi|300312191|ref|YP_003776283.1| outer membrane porin [Herbaspir... 258 7e-70 gi|300310676|ref|YP_003774768.1| outer membrane protein (porin) ... 186 3e-48 >gi|300309527|ref|YP_003773619.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 631 bits (1628), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/394 (84%), Positives = 358/394 (90%), Gaps = 4/394 (1%) Query: 1 MKKSLLALAVLGAFAGAANAQSSVTIYGIVDTGVVYQSKVATASGGTGTKFGLNSGIIQG 60 MKKSLLALAVLGAFAGAA AQSSVTIYGIVDTGVVYQSKVAT +GGTG+KF LNSG+IQG Sbjct: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGVVYQSKVATPTGGTGSKFSLNSGVIQG 60 Query: 61 SRIGFKGVEDLGGGLSAVFQLETGFSNDTGGLQGSDATTGSNLFRRKSVVGLTGNFGSVL 120 SRIGFKG EDLGGGLSAVF LE GFSNDTG L D+ T + LFRRKSVVGL GNFGSVL Sbjct: 61 SRIGFKGTEDLGGGLSAVFNLEAGFSNDTGALD--DSKTSNTLFRRKSVVGLAGNFGSVL 118 Query: 121 VGRQTDFADTISAYTAVQDFGGWVNNSGSGLDRLQGTRTNNSISYTTNSLNGFTGNLMYG 180 +GRQTDFADTIS+YT+VQDFGGW +G LDRL+GTRTNNSISYTT +LNGFTGNLMYG Sbjct: 119 LGRQTDFADTISSYTSVQDFGGWTGAAGHNLDRLEGTRTNNSISYTTANLNGFTGNLMYG 178 Query: 181 FGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTPSDVSLIPSSSTTTNVNTLTA 240 FGETAGQTSAGQ+FG+GGKYDNGPLGLGINYYQSKAGSTP+D SL+ ++T TN T Sbjct: 179 FGETAGQTSAGQAFGVGGKYDNGPLGLGINYYQSKAGSTPADASLL--AATGTNQFTNGT 236 Query: 241 NSGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTSVGVGSLTSLTNRTLARSN 300 N+GSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLT+ GVGSL +++NRTLA SN Sbjct: 237 NNGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTAAGVGSLATISNRTLAASN 296 Query: 301 KADIYEIGTAYSLSPSLKLLAAVDHTRANFDGVSNKTKLTQVSLGTDYWLSKRTDLYAFL 360 KADIYEIGTAYSLSPSLKLLAAVDHTRA FDGVS K KLTQVSLGTDYWLSKRTDLYAFL Sbjct: 297 KADIYEIGTAYSLSPSLKLLAAVDHTRAQFDGVSGKAKLTQVSLGTDYWLSKRTDLYAFL 356 Query: 361 AYTKASDMVNPGVSDSTGTDGNQGAVAVGIRHKF 394 AY+KA+D+ NPGV+DS+GTDGNQGAVAVGIRHKF Sbjct: 357 AYSKATDLNNPGVADSSGTDGNQGAVAVGIRHKF 390 >gi|300313580|ref|YP_003777672.1| outer membrane porin [Herbaspirillum seropedicae SmR1] Length = 387 Score = 528 bits (1360), Expect = e-151, Method: Compositional matrix adjust. Identities = 288/399 (72%), Positives = 328/399 (82%), Gaps = 17/399 (4%) Query: 1 MKKSLLALAVLGAFAGAANAQSSVTIYGIVDTGVVYQSKV----ATASGGTGTKFGLNSG 56 MKKSLLALAVLGAFAGAA AQSSVTIYGIVDTG+ Y SKV A + TG+KFG+NSG Sbjct: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSG 60 Query: 57 IIQGSRIGFKGVEDLGGGLSAVFQLETGFSNDTGGLQGSDATTGSNLFRRKSVVGLTGNF 116 +IQGSRIGFKGVEDLGGGLSAVF LETGF++D GGLQGSDA T SNLFRRKSVVGL+G F Sbjct: 61 VIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGGF 120 Query: 117 GSVLVGRQTDFADTISAYTAVQDFGGWVNNSGSGLDRLQGTRTNNSISYTTNSLNGFTGN 176 G+VL+GRQTDFADTISAYTAV DFGG V NSGS L+RLQGTRTNNS+SYTT +L+GFTGN Sbjct: 121 GTVLLGRQTDFADTISAYTAVADFGGVVANSGSSLNRLQGTRTNNSVSYTTANLSGFTGN 180 Query: 177 LMYGFGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTPSDVSLIPSSSTTTNVN 236 L+YGFGE AG+TSAGQ++GIGGKYDNGPLGLGINYYQSKAGSTPSD SLIP++ T Sbjct: 181 LIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATNANT 240 Query: 237 TLTANSGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTSVGVGSLTSLTNRTL 296 L +G+TA K LNV ASYQFGPARVY N+SRVKQDL + + TL Sbjct: 241 ALGV-AGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTVATA-----------TL 288 Query: 297 ARSNKADIYEIGTAYSLSPSLKLLAAVDHTRANFDGVSNKTKLTQVSLGTDYWLSKRTDL 356 A + KAD YEIGTAYSLSPSLKLLAAVDH+RA F+GV+ K KLTQ+SLG DY+LSKRTDL Sbjct: 289 ANAQKADTYEIGTAYSLSPSLKLLAAVDHSRATFNGVNTKGKLTQISLGADYFLSKRTDL 348 Query: 357 YAFLAYTKASDMVNPGVS-DSTGTDGNQGAVAVGIRHKF 394 YAF++ +ASD+ NPGV+ +TG+D +Q A+ GIRHKF Sbjct: 349 YAFVSNMRASDIQNPGVTGGATGSDASQTAIITGIRHKF 387 >gi|300310328|ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 405 Score = 285 bits (728), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 179/412 (43%), Positives = 245/412 (59%), Gaps = 25/412 (6%) Query: 1 MKKSLLALAVLGAFAGAANAQSS-VTIYGIVDTGVVYQSKVATASGGTGTKFGLNSGIIQ 59 MKKSLLALAVLGAFAGAA+AQSS +TIYG +D + Y +K+AT TG+ + SG+++ Sbjct: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKNTGSLTAVESGLVK 60 Query: 60 GSRIGFKGVEDLGGGLSAVFQLETGFSNDTGGLQGSDATTGSNLFRRKSVVGLTGNFGSV 119 GSR+G KG EDLGGGL AVF LE GF+ DTG +A G ++ R++ VGL+GNFG+V Sbjct: 61 GSRLGIKGSEDLGGGLKAVFTLENGFNVDTG-----EAGQGKLMWGRQTTVGLSGNFGTV 115 Query: 120 LVGRQTDFADTISAYTAVQDFGGWVNNSGSGLDRLQGTRTNNSISYTTNSLNGFTGNLMY 179 LVGRQ D + I + FG GLDR G R NNSI Y + + NG + + +Y Sbjct: 116 LVGRQNDPLNDIGGIASAGGFGVPGTVHSKGLDRTDGQRLNNSIRYNSPNFNGLSFSGIY 175 Query: 180 GFGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTPSDVSLIPSSSTTTNVNTLT 239 GFGE G+ G+S G+G +Y NGPL LG+ Y+QSK G SD S ++ N Sbjct: 176 GFGEQVGRAVGGRSIGLGSQYVNGPLSLGLGYFQSKMGGG-SDGSSDVNAKAACNGAGEK 234 Query: 240 ANSGSTAQKVLNVAASYQFGPARVYGNWSRVKQDL----------NTQANLTSVGVGSLT 289 ++G T K +AA+YQFGPA+VYG +S V+ L N + G+ Sbjct: 235 DHAGDTCLKTWTLAAAYQFGPAKVYGAFSHVRLPLAKLHTKVRKDNNFGAMYDAKTGTGY 294 Query: 290 SLTNRTL-----ARSNKADIYEIGTAYSLSPSLKLLAAVDHTRANFDGVSNKTKLTQVSL 344 + ++ T A + ++IG +Y L PSL L++AV HTRA F G ++ +L Q++L Sbjct: 295 NPSDATAFSIGGANHKSSQTFDIGMSYQLMPSLTLMSAVQHTRAKFVGAASG-RLLQLNL 353 Query: 345 GTDYWLSKRTDLYAFLAYTKASDMVNPGVS--DSTGTDGNQGAVAVGIRHKF 394 G Y LSKRT YA + ++SDM N G+S G D +Q A++ G+ H F Sbjct: 354 GAKYDLSKRTSAYALVRNLRSSDMYNVGLSKDQEPGIDRSQTAISTGLIHTF 405 >gi|300312191|ref|YP_003776283.1| outer membrane porin [Herbaspirillum seropedicae SmR1] Length = 372 Score = 258 bits (658), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 157/382 (41%), Positives = 224/382 (58%), Gaps = 46/382 (12%) Query: 24 VTIYGIVDTGVVYQSKVATASGGTGTKFGLNSGIIQGSRIGFKGVEDLGGGLSAVFQLET 83 VT+YG++D +VY SKV +G ++ L+SG SRIG +G E+LG GL+A+FQLET Sbjct: 26 VTVYGVIDMSLVYTSKVGPDNG---SRASLDSGDAMASRIGLRGREELGDGLAAIFQLET 82 Query: 84 GFSNDTGGLQGSDATTGSNLFRRKSVVGLTGNFGSVLVGRQTDFADTI-SAYTAVQDFGG 142 GF+ D G + AT G+ LF RKSVVGL G FG++ VGRQTD+ + I YT+ Q FGG Sbjct: 83 GFAGDDGAM----ATPGT-LFDRKSVVGLAGRFGTLTVGRQTDYLEEIGQQYTSFQIFGG 137 Query: 143 WVNNSG--SGLDRLQGTRTNNSISYTTNSLNGFTGNLMYGFGETAGQTSAGQSFGIGGKY 200 + + LDR+ G R+NNS+ + T G G+ YG GE AG T +GQS G+GG + Sbjct: 138 GGVRAAHFNSLDRITGARSNNSLRFDTAEYGGLRGSFYYGAGEVAGSTRSGQSLGVGGNF 197 Query: 201 DNGPLGLGINYYQSKAGSTPSDVSLIPSSSTTTNVNTLTANSGSTAQKVLNVAASYQFGP 260 G +G+G Y+QSK S + L A +G T K + ASYQ GP Sbjct: 198 RRGNVGVGAAYFQSKLAS-----------------DALPARAGDTELKTFTLGASYQAGP 240 Query: 261 ARVYGNWSRVKQDLNTQANLTSVGVGSLTSLTNRTLARSNKADIYEIGTAYSLSPSLKLL 320 A+++ WS++++ TQ L S G+ ++TS T +A++ ++G Y+L L LL Sbjct: 241 AKLFAAWSQIRR--PTQQPLASSGLVAITSAT--------RANVLDVGVDYALDSKLHLL 290 Query: 321 AAVDHTRANFD---GVSNKTKLTQVSLGTDYWLSKRTDLYAFLAYTKASDMVNPGV---- 373 A+V H RA+ G + + TQV+LG D LSKRTD+YA + +A D++NPG+ Sbjct: 291 ASVIHDRADLSRAAGGATRGSTTQVNLGVDLLLSKRTDVYAMASRQQARDVLNPGIISAA 350 Query: 374 -SDSTGTDGNQGAVAVGIRHKF 394 S + D +Q + VG+RHKF Sbjct: 351 YSSAPADDSSQNVLRVGLRHKF 372 >gi|300310676|ref|YP_003774768.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 186 bits (471), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 151/411 (36%), Positives = 201/411 (48%), Gaps = 76/411 (18%) Query: 1 MKKSLLALAVLGAFAGAANAQSSVTIYGIVDTGVVYQSKVATASGGTGTKFGLNSGIIQG 60 MKK+LL A+L A A+AQSSV+IYG++D G+ Y S + GG ++SGI QG Sbjct: 1 MKKTLLVAAMLAGGATTAHAQSSVSIYGLIDLGLTYYSSAPKSGGGGARLLRMDSGIAQG 60 Query: 61 SRIGFKGVEDLGGGLSAVFQLETGFSNDTGGLQGSDATTGSNLFRRKSVVGL-TGNFGSV 119 SRIGFKG EDLGGG++A F LETGF D G L G LF R+S VGL + +GS+ Sbjct: 61 SRIGFKGTEDLGGGMNAFFTLETGFGADDGSL-----GQGGLLFGRQSFVGLGSTQWGSL 115 Query: 120 LVGRQTDFADTISAYTAVQDFG-----GWVNNS----GSGLDR--LQGTRTNNSISYTTN 168 VGRQ DF I A+ GW ++ G+ L+ G RTNNSI Y + Sbjct: 116 SVGRQYDFMANIGGQYAMGALSPAGSFGWGLHADAAHGTALNNHIYAGDRTNNSIKYNSA 175 Query: 169 SLNGFTGNLMYGFGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTPSDVSLIPS 228 GF+ M G GETAG +AG++ G+YDNGP + Y Sbjct: 176 KFGGFSFGAMVGLGETAGNNNAGRTVSATGQYDNGPFSGALAY----------------- 218 Query: 229 SSTTTNVNTLTANSGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTSVGVGSL 288 T++ T GS + ++ A YQ G +G ++VK + NT A Sbjct: 219 ----TDIKDST---GSFSTRIYGGGARYQIGAFTPFGVVTQVK-NTNTSA---------- 260 Query: 289 TSLTNRTLARSNKADIYEIGTAYSLSPSLKLLAAVDHTRANFDGVSNKTKLTQVSLGTDY 348 KA YE+GT Y+L+P L AA + N GV N L DY Sbjct: 261 ------------KATTYELGTVYALTPLWDLAAAYQFQKRN-QGVGNAQALVAT---VDY 304 Query: 349 WLSKRTDLYAFLAYTK-----ASDMVNPGVSDSTGTDGNQGAVAVGIRHKF 394 +SKRTDLY Y + A + G+ +T GNQ A+ +G+RH+F Sbjct: 305 KISKRTDLYVGAVYDRDKGYNAYPVFGGGIQSAT---GNQTALRLGMRHRF 352 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.129 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,164,135 Number of extensions: 51047 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 14 Length of query: 394 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 307 Effective length of database: 1,207,925 Effective search space: 370832975 Effective search space used: 370832975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 131 (55.1 bits)