BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0216.p (511 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily prot... 810 0.0 gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294... 411 e-116 >gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily protein [Herbaspirillum seropedicae SmR1] Length = 513 Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/512 (79%), Positives = 453/512 (88%), Gaps = 2/512 (0%) Query: 1 MATREELAVIKAARAGESRAQLALGRRYLDGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 MATREELAVIKAARAGESRAQLALGRRYL+GGSGLPRSKGTAFYWLRRAAQQGVDDAWMI Sbjct: 1 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 Query: 61 IGRNITYDQVKELSSPQEAAIWYEKAFEAGVPQAGVIFARLVLEHTEQFDSNAHARAIAA 120 IGRNITY+QVKELS P+EAA+WYEKAFEAGVPQAG+IFARLVL++T +FDSN HARAIAA Sbjct: 61 IGRNITYEQVKELSPPREAAVWYEKAFEAGVPQAGLIFARLVLDNTSEFDSNTHARAIAA 120 Query: 121 LSLLASRDDHEAQWLLAQQMQRHGQPMVPGLPAS--AVEERLVREAARAGIEQAQYALLD 178 LSLLASRDDHEAQWLLAQQMQRHGQPM+PG A+ A E++L+ EAARAGIE+AQYA+LD Sbjct: 121 LSLLASRDDHEAQWLLAQQMQRHGQPMLPGAAAASPAYEDKLMLEAARAGIEEAQYAVLD 180 Query: 179 KAWQQGQGAAFARGAAVLVKRLIERNSQAVAQLDKEGDATGLVQLNAEEATLLLRYGQWQ 238 KAWQQG A+FARGA + +RL+ R++ AVAQL+K+G G VQL+ EEATLLLRYGQW+ Sbjct: 181 KAWQQGDEASFARGAQRVTQRLLARHANAVAQLEKDGQIHGAVQLSDEEATLLLRYGQWR 240 Query: 239 ARAAAPELPQLMRLFELAALAGEVEARLELGLLCAKIDRAGNRVFMEQGLANFKKALHWL 298 R A+P+ +L LFELAA+ G +A LELGLLCAKIDR G R+FME GLANFKKALHWL Sbjct: 241 LRGASPDPDELQILFELAAMGGNAQACLELGLLCAKIDRQGERIFMEHGLANFKKALHWL 300 Query: 299 VLAGEGGTAQAWHALARIYSRSIYSQRNLQVAQQYLEKAAESGLVEAQSELAQIFWRNRR 358 AGE G AQ WHALARIYSRSIYSQRNLQVAQ YLEKAA++GLVEAQ ELAQ+ WR+RR Sbjct: 301 ERAGEAGVAQGWHALARIYSRSIYSQRNLQVAQHYLEKAAQAGLVEAQCELAQVCWRHRR 360 Query: 359 DDPMHDVKALYWWQQAAAQGEASAADALQPFMAVEDAQSWAVQARAQLSDKLRNSNPFLS 418 DDP++DVKALYWWQQAAAQGE +A AL F A DAQ WA+QA+A L+DKLRNS+PFLS Sbjct: 361 DDPLNDVKALYWWQQAAAQGEPTAQAALDAFAAQPDAQGWALQAQALLTDKLRNSSPFLS 420 Query: 419 ARIELAAIFGLTKPEALLIDIKQADYGHCLVVDICAHHARSKRRLIAVQTEAQRAAINRV 478 ARIELAA FGLTKPEALLIDIK ADYGHCLVVDICAHHARSKRRLIAVQT+AQRA +NRV Sbjct: 421 ARIELAATFGLTKPEALLIDIKAADYGHCLVVDICAHHARSKRRLIAVQTDAQRATLNRV 480 Query: 479 SRLFGDVDCGFSGPEGNYRQRQYRLRTAFPDI 510 SRLFGDVDCGF G EGNYRQRQYRLRT FP + Sbjct: 481 SRLFGDVDCGFDGLEGNYRQRQYRLRTTFPGL 512 >gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294 [Herbaspirillum seropedicae SmR1] Length = 532 Score = 411 bits (1057), Expect = e-116, Method: Compositional matrix adjust. Identities = 264/517 (51%), Positives = 340/517 (65%), Gaps = 10/517 (1%) Query: 1 MATREELAVIKAARAGESRAQLALGRRYLDGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 MA RE+LA+I+AARAG++ AQL LG+RYL GG+GLP+S TAF+WL RAA+Q + DAWM+ Sbjct: 1 MANREDLAIIRAARAGQAAAQLTLGKRYLFGGNGLPQSLSTAFHWLERAARQELADAWML 60 Query: 61 IGRNITYDQVKELSSPQEAAIWYEKAFEAGVPQAGVIFARLVLEHTEQFDSNAHARAIAA 120 I +I Y+ V L+ PQEAA WYE+AFE G+ +AG+ FARLVLE + + ARAI Sbjct: 61 IAEHIPYEVVVTLTRPQEAAQWYERAFEGGMTKAGLAFARLVLESAGEPGAELKARAIRV 120 Query: 121 LSLLASRDDHEAQWLLAQQMQRHGQPMVPGLPASAVE---------ERLVREAARAGIEQ 171 L ++A D +AQWLLA+Q + +P A+ ++ ++AA AGIEQ Sbjct: 121 LQVVAREGDPDAQWLLARQGSQPAEPAASAAVAAPAPAPDLPPEDLQQWTQKAADAGIEQ 180 Query: 172 AQYALLDKAWQQGQGAAFARGAAVLVKRLIERNSQAVAQLDKEGDATGLVQLNAEEATLL 231 AQ+AL D AWQQ F + A L +L+ + VAQL+ +A L + LL Sbjct: 181 AQHALADAAWQQADLIQFRQRAQPLADKLLRQYEALVAQLNGPAEALA-TALGPQNIVLL 239 Query: 232 LRYGQWQARAAAPELPQLMRLFELAALAGEVEARLELGLLCAKIDRAGNRVFMEQGLANF 291 R Q +L Q +L ELAALA + +A+L LGLL ++D G R F G AN+ Sbjct: 240 RRLAQVHLGEKRADLQQAQQLLELAALACDRDAQLALGLLYGRVDEQGVRCFPGLGSANY 299 Query: 292 KKALHWLVLAGEGGTAQAWHALARIYSRSIYSQRNLQVAQQYLEKAAESGLVEAQSELAQ 351 KKA+ WL LAGE G A AW+ L+RIY + +SQRNL Q YLE+AAE G V AQ E Sbjct: 300 KKAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVAAQLECGI 359 Query: 352 IFWRNRRDDPMHDVKALYWWQQAAAQGEASAADALQPFMAVEDAQSWAVQARAQLSDKLR 411 WRNRRD+ +DV+ALYW Q+AA+QG+ A L A +WAV ARAQL+ + Sbjct: 360 GAWRNRRDEAGNDVRALYWLQKAASQGDEQAQALLDKVADRPQAAAWAVLARAQLTREQV 419 Query: 412 NSNPFLSARIELAAIFGLTKPEALLIDIKQADYGHCLVVDICAHHARSKRRLIAVQTEAQ 471 N++PFL+ARIELA +FGLT+PEALLID+KQAD GHCL+VDI + +ARSKRRLI V+ Q Sbjct: 420 NAHPFLAARIELATLFGLTRPEALLIDLKQADRGHCLMVDIRSQYARSKRRLIMVENGEQ 479 Query: 472 RAAINRVSRLFGDVDCGFSGPEGNYRQRQYRLRTAFP 508 R A+NR+ RLF DVDCG SGPEGNYRQR YRL+T P Sbjct: 480 RGALNRIGRLFEDVDCGPSGPEGNYRQRLYRLKTVLP 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.131 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,454,830 Number of extensions: 55370 Number of successful extensions: 269 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 249 Number of HSP's successfully gapped: 2 Length of query: 511 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 422 Effective length of database: 1,198,455 Effective search space: 505748010 Effective search space used: 505748010 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)