BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0215.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309530|ref|YP_003773622.1| general secretion pathway prote...   248   1e-67

>gi|300309530|ref|YP_003773622.1| general secretion pathway protein
           [Herbaspirillum seropedicae SmR1]
          Length = 183

 Score =  248 bits (634), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 123/155 (79%), Positives = 133/155 (85%), Gaps = 4/155 (2%)

Query: 1   MRRSL----RHPAFLFLQRGLARLRWILALTVLAVAAALLLPPLVTRFNHDHSPQALAAE 56
           MRRSL    RHPAFLFLQRGLARLRWIL LTVLAV AALL+PPLVTRFNHDHSPQA AAE
Sbjct: 29  MRRSLQPSRRHPAFLFLQRGLARLRWILVLTVLAVGAALLVPPLVTRFNHDHSPQAQAAE 88

Query: 57  KDMQAIAAGLERYRQDNGRYPSAAQGLLALVIKPTRAPVPGNWSIGGYVDRLPRDPWGNS 116
           KDM+AIAAGLERYRQDNGRYPS  QGLLALVI+P R P+   W +GGYV+RLPRDPWGN 
Sbjct: 89  KDMKAIAAGLERYRQDNGRYPSTQQGLLALVIRPVREPLANGWQLGGYVERLPRDPWGNP 148

Query: 117 YQYGADDDGTSYELYSFGQAGPDGGADGEQVIRQH 151
           YQY ADDDG SYEL+SFGQAGP+GG D ++VI  H
Sbjct: 149 YQYQADDDGASYELFSFGQAGPEGGDDDDRVISLH 183


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 521,081
Number of extensions: 22346
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)