BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0202.p
         (417 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309541|ref|YP_003773633.1| aspartyl-tRNA synthetase [Herba...   854   0.0  
gi|300312097|ref|YP_003776189.1| lysyl-tRNA synthetase [Herbaspi...    64   2e-11

>gi|300309541|ref|YP_003773633.1| aspartyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 599

 Score =  854 bits (2207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/417 (99%), Positives = 416/417 (99%)

Query: 1   VNAGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFLNE 60
           VNAGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFLNE
Sbjct: 183 VNAGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFLNE 242

Query: 61  QEIRDLFEGMIRLVFKNALDIDLPNPFPVMDFATAMGMYGSDKPDMRVKLEFTELTDVMK 120
           QEIRDLFEGMIRLVFKNALDIDLPNPFPVMDFATAMG YGSDKPDMRVKLEFTELTDVMK
Sbjct: 243 QEIRDLFEGMIRLVFKNALDIDLPNPFPVMDFATAMGKYGSDKPDMRVKLEFTELTDVMK 302

Query: 121 DVDFKVFSGAANSEGGRVVGLRVPGGAEMPRSEIDAYTQFVAIYGAKGLAYIKVNEKAKG 180
           DV+FKVFSGAANSEGGRVVGLRVPGGAEMPRSEIDAYTQFVAIYGAKGLAYIKVNEKAKG
Sbjct: 303 DVEFKVFSGAANSEGGRVVGLRVPGGAEMPRSEIDAYTQFVAIYGAKGLAYIKVNEKAKG 362

Query: 181 RDGLQSPIVKNIHDAALNAILEKTGAQDGDLIFFGADKAKVVNDAIGALRVKIGHSEFGK 240
           RDGLQSPIVKNIHDAALNAILEKTGAQDGDLIFFGADKAKVVNDAIGALRVKIGHSEFGK
Sbjct: 363 RDGLQSPIVKNIHDAALNAILEKTGAQDGDLIFFGADKAKVVNDAIGALRVKIGHSEFGK 422

Query: 241 KNGLFDDAWRPLWVVDFPMFEYDEDGQRWVALHHPFTSPKDGHEDFISTNPGAAIAKAYD 300
           KNGLFDDAWRPLWVVDFPMFEYDEDGQRWVALHHPFTSPKDGHEDFISTNPGAAIAKAYD
Sbjct: 423 KNGLFDDAWRPLWVVDFPMFEYDEDGQRWVALHHPFTSPKDGHEDFISTNPGAAIAKAYD 482

Query: 301 MVLNGWELGGGSVRIHRADVQSKVFRALKIDDEEARLKFGFLLDALQYGAPPHGGIAFGL 360
           MVLNGWELGGGSVRIHRADVQSKVFRALKIDDEEA+LKFGFLLDALQYGAPPHGGIAFGL
Sbjct: 483 MVLNGWELGGGSVRIHRADVQSKVFRALKIDDEEAKLKFGFLLDALQYGAPPHGGIAFGL 542

Query: 361 DRLVTMMAGAESIRDVIAFPKTQRAQCLLTHAPSEVDEKQLRELHIRLRNTEPAVKA 417
           DRLVTMMAGAESIRDVIAFPKTQRAQCLLTHAPSEVDEKQLRELHIRLRNTEPAVK+
Sbjct: 543 DRLVTMMAGAESIRDVIAFPKTQRAQCLLTHAPSEVDEKQLRELHIRLRNTEPAVKS 599


>gi|300312097|ref|YP_003776189.1| lysyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 513

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 50/212 (23%)

Query: 191 NIHDAALNAILEKTGAQDGDLIF-------FG--ADKAKVVNDAIGALRVKIGHSEFGKK 241
            I  A L      T AQ  D+ F       FG   D+A +    IGAL++          
Sbjct: 332 TITGAILKYAPNYTEAQLADIDFLRTELKKFGVKTDQAPLAGAGIGALQL---------- 381

Query: 242 NGLFDDA-----WRPLWVVDFPMFEYDEDGQRWVALHHPFTSPKDGHEDFISTNPGAAIA 296
             LF++      W P +++D+P+                  SP     D +     A I 
Sbjct: 382 -ALFEETAESQLWNPTYIIDYPVE----------------VSPLARASDTV-----AGIT 419

Query: 297 KAYDMVLNGWELGGGSVRIHRADVQSKVFRAL----KIDDEEARLKFGFLLDALQYGAPP 352
           + +++ + G E+  G   ++ A+ Q+  F A        DEEA       + AL+YG PP
Sbjct: 420 ERFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMPP 479

Query: 353 HGGIAFGLDRLVTMMAGAESIRDVIAFPKTQR 384
            GG   G+DRL+ ++  + +IRDVI FP  +R
Sbjct: 480 AGGCGIGIDRLMMLITDSPNIRDVILFPHLRR 511


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,289,458
Number of extensions: 53838
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 417
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,203,190
Effective search space: 395849510
Effective search space used: 395849510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)