BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0194.p
         (88 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309588|ref|YP_003773680.1| TPR repeat containing, SEL1 sub...   143   3e-36
gi|300309590|ref|YP_003773682.1| TPR repeat containing, SEL1 sub...   143   3e-36

>gi|300309588|ref|YP_003773680.1| TPR repeat containing, SEL1
           subfamily [Herbaspirillum seropedicae SmR1]
          Length = 517

 Score =  143 bits (361), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 71/79 (89%)

Query: 1   LLPAPATGIWHGRIDPAHPLAKVFNQWNRQAYVEEGQPFPDLRDRGLEISPKEIEWQWLD 60
           LLPAPATGIWHG IDPAHPL+KVFN W RQAYVEEGQ FPD R+RGLEISPK+I+WQWLD
Sbjct: 433 LLPAPATGIWHGTIDPAHPLSKVFNLWTRQAYVEEGQSFPDPRERGLEISPKDIQWQWLD 492

Query: 61  QANQPLPSGRKAITIRNFS 79
           QAN PLPSGRK I IRNFS
Sbjct: 493 QANLPLPSGRKDIIIRNFS 511


>gi|300309590|ref|YP_003773682.1| TPR repeat containing, SEL1
           subfamily [Herbaspirillum seropedicae SmR1]
          Length = 518

 Score =  143 bits (360), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/78 (84%), Positives = 71/78 (91%)

Query: 1   LLPAPATGIWHGRIDPAHPLAKVFNQWNRQAYVEEGQPFPDLRDRGLEISPKEIEWQWLD 60
           LLPAPATGIWHG IDPAH L+KVFN W RQAYVEEGQ FPD R+RGL+ISPK+I+WQWLD
Sbjct: 431 LLPAPATGIWHGTIDPAHSLSKVFNLWTRQAYVEEGQSFPDPRERGLDISPKDIQWQWLD 490

Query: 61  QANQPLPSGRKAITIRNF 78
           QANQPLPSGRK ITIRNF
Sbjct: 491 QANQPLPSGRKDITIRNF 508


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.136    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 342,517
Number of extensions: 13905
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 88
Length of database: 1,619,870
Length adjustment: 58
Effective length of query: 30
Effective length of database: 1,345,240
Effective search space: 40357200
Effective search space used: 40357200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)