BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0182.p
         (223 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312323|ref|YP_003776415.1| chemotaxis signal transduction ...   209   2e-55

>gi|300312323|ref|YP_003776415.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score =  209 bits (531), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/145 (75%), Positives = 121/145 (83%), Gaps = 4/145 (2%)

Query: 82  ASALVVRIAGEWLAIATSVVQEVAETRPLHSLPHQRNTAIAGVVNIRGSLRICVSLARVF 141
           +S LVVRI  EW AIAT+VVQEVAE R +HSLPHQRN AI GV+NIRG+LRICVSLA++F
Sbjct: 68  SSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNIRGALRICVSLAQLF 127

Query: 142 QLPDDTPA---PHLLVAAHEGQILVFPVEEVAGVHRYADESLAPVPTTLAQAAIQYTRGM 198
           Q     P    P LLVA+H+GQ LVFPV+EVAGVHR+ D SL PVPTTLAQAAIQYTRGM
Sbjct: 128 QFGAAAPKALPPKLLVASHDGQTLVFPVDEVAGVHRH-DGSLGPVPTTLAQAAIQYTRGM 186

Query: 199 VEWRGRPIGLLDHELLFYVLNRSMT 223
           +EWRG  IGLLDHELLFYVLNRSMT
Sbjct: 187 LEWRGHAIGLLDHELLFYVLNRSMT 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 724,501
Number of extensions: 29747
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,231,600
Effective search space: 173655600
Effective search space used: 173655600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)