BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0179.p
         (187 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312321|ref|YP_003776413.1| protein-glutamate methylesteras...   258   2e-70
gi|300311029|ref|YP_003775121.1| protein-glutamate methylesteras...    76   2e-15
gi|300311338|ref|YP_003775430.1| chemotaxis-specific methylester...    62   3e-11

>gi|300312321|ref|YP_003776413.1| protein-glutamate methylesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score =  258 bits (659), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 136/171 (79%), Positives = 143/171 (83%), Gaps = 4/171 (2%)

Query: 1   VKIGIVNDTPMMVEVLRRVIAESGRHELIWIARDGEQAVQMCAWQLPDVVLMDLLMPKMD 60
           +KIGIVNDTPMMVEVLRRVIAESGRHELIWIARDGEQAVQMCAWQLPDVVLMDLLMPK+D
Sbjct: 1   MKIGIVNDTPMMVEVLRRVIAESGRHELIWIARDGEQAVQMCAWQLPDVVLMDLLMPKVD 60

Query: 61  GVEATRRIMQDTPCPILVVTSDMDTGAAKIYEAMGYGALDATQTPALIGAAGKRDAAALI 120
           G EATRRIM+ TPCPILVVTSDMDT A KIYEAMGYGALDATQTPALIGAAGKRDAAALI
Sbjct: 61  GAEATRRIMEATPCPILVVTSDMDTSADKIYEAMGYGALDATQTPALIGAAGKRDAAALI 120

Query: 121 EKIDQLGLLSPDDMAAPVR----LPLRPLAPNLQGDLAPLVAIGGPGRRPA 167
           EKID LG LSP+ ++ PVR      L P  P     L PLVA+G     PA
Sbjct: 121 EKIDNLGRLSPEMVSPPVRGGRAETLAPAQPARADSLPPLVAVGASAGGPA 171


>gi|300311029|ref|YP_003775121.1| protein-glutamate methylesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 353

 Score = 75.9 bits (185), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 9/158 (5%)

Query: 1   VKIGIVNDTPMMVEVLRRVIAESGRHELIWIARDGEQAVQMCAWQLPDVVLMDLLMPKMD 60
           +K+ I++D+ +M   L +V  ++G  + I + R+G +AV++     PDVV +D+ MP+MD
Sbjct: 2   IKLLIIDDSALMRRQLMQVFEQAGGFD-ICLGRNGREAVELNRSFAPDVVTLDINMPEMD 60

Query: 61  GVEATRRIMQDTPCPILVVTSDMDTGAAKIYEAMGYGALDATQTPALIGAAGKRDAAALI 120
           G+ A   +M D P P+++V+S  + GA   +EAM  GA+D    P+          +  +
Sbjct: 61  GLSALSLMMLDRPVPVVMVSSLTEQGALATFEAMNLGAVDYVAKPS-------GTISLSL 113

Query: 121 EKIDQLGLLSPDDMAAPVRLPLRPLAPNLQGDLAPLVA 158
            +I+Q  LL+   +AA  R+  R  AP L     PL A
Sbjct: 114 HEIEQ-DLLAKVRVAAKARIRSRAPAPELARAREPLAA 150


>gi|300311338|ref|YP_003775430.1| chemotaxis-specific methylesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score = 61.6 bits (148), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 69/120 (57%)

Query: 1   VKIGIVNDTPMMVEVLRRVIAESGRHELIWIARDGEQAVQMCAWQLPDVVLMDLLMPKMD 60
           +K+ IV+D+ ++  V+R +I      E++ +A D   A ++     PDV+ +D+ MP+MD
Sbjct: 3   IKVLIVDDSALIRSVMREIIGSQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRMD 62

Query: 61  GVEATRRIMQDTPCPILVVTSDMDTGAAKIYEAMGYGALDATQTPALIGAAGKRDAAALI 120
           G++   ++M+  P P+++V+S  + G+     A+  GA+D    P +   +G ++ A +I
Sbjct: 63  GLDFLEKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADMI 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 515,855
Number of extensions: 20035
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 4
Length of query: 187
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,241,070
Effective search space: 132794490
Effective search space used: 132794490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)