BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0176.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312319|ref|YP_003776411.1| acyl dehydratase NodN [Herbaspi...   267   2e-73

>gi|300312319|ref|YP_003776411.1| acyl dehydratase NodN
           [Herbaspirillum seropedicae SmR1]
          Length = 151

 Score =  267 bits (683), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 125/151 (82%), Positives = 141/151 (93%)

Query: 1   MRTIASLEELKSLAGQEVATSEWIAVTQEQVDRFAEATGDHQWIHVDPERAARELPYGGT 60
           MR+IA+L+EL++LAGQEVATS+WI VTQEQV+R AEATGDHQWIHVDPERAAR LPYGGT
Sbjct: 1   MRSIATLDELQALAGQEVATSDWITVTQEQVNRLAEATGDHQWIHVDPERAARALPYGGT 60

Query: 61  VAHGFLTLALLPRLLSESISLGPDVRMLLNYGLNRVRFPAPLPVGRKVRGIIRLESTEDI 120
           VAHGFLTLALLPR+L+E+I LGPDV+MLLNYGLNRVRFPAPLPVGR+VRG+I L+S E I
Sbjct: 61  VAHGFLTLALLPRMLTEAIDLGPDVKMLLNYGLNRVRFPAPLPVGRRVRGVIVLQSVEAI 120

Query: 121 PGGVQLAWLITVECEGSDKPVCVAEFLVRRY 151
           P GVQLAW +TV+CEG DKPVCVAEFLVRRY
Sbjct: 121 PAGVQLAWEVTVQCEGMDKPVCVAEFLVRRY 151


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 504,127
Number of extensions: 20410
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)