BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0175.p
         (424 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312318|ref|YP_003776410.1| diguanylate cyclase with PAS/PA...   611   e-176
gi|300313029|ref|YP_003777121.1| two component hybrid sensor his...    55   1e-08

>gi|300312318|ref|YP_003776410.1| diguanylate cyclase with PAS/PAC
           sensor protein [Herbaspirillum seropedicae SmR1]
          Length = 611

 Score =  611 bits (1575), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 305/424 (71%), Positives = 342/424 (80%), Gaps = 16/424 (3%)

Query: 1   MMSERPPVQVDADAEFYRKALAFNNLTLSYIARGAPLEQLLDRIASGFSGTYPQRALAIF 60
           M SERPP +  AD+ F+ KALA++ LTL+YIARGAPL+QLLDRIA GF+  YP+R LAIF
Sbjct: 1   MTSERPPHR--ADSAFHEKALAYHQLTLTYIARGAPLDQLLDRIAVGFAQAYPERWLAIF 58

Query: 61  LFDPQARRLQVGAAPRVAXGGGGGGGGGGGPAFLAELTALAVDDPDTPQFWHALTALAAR 120
           L+D QARR+Q GA P +A            PA +A++  L  +  DTP  W     LA R
Sbjct: 59  LYDDQARRMQAGAVPYMA------------PALVAQIQDLPAEAADTPDVWQRFDELAGR 106

Query: 121 HERSLLEMLPLRSFAGEVAGILTICAANDAPGDASHLEQAYRDTVGAAVSMAMLAIERSL 180
           H   L EMLPLRSFAG++AG++ I A +   G     +QAYR TV AAVSMAMLAIER+L
Sbjct: 107 HGVRLAEMLPLRSFAGQLAGLMMIAATDADSGFEE--DQAYRQTVSAAVSMAMLAIERAL 164

Query: 181 VPVHARVKSDPPGEADERMALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSH 240
           VP H     D P +A ERMALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSH
Sbjct: 165 VPGHVLTPRDAPDQAYERMALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSH 224

Query: 241 LQDAYQRIHPDDLPYVQETIRQHFASRSDTYQVEHRIRCRDGSYKWISSRGKVVARDAEG 300
           L DAYQRIHPDDL YVQ+TIRQHF +RSD Y+VEHRIRC+DGSYKWISSRGKVVARDA+G
Sbjct: 225 LADAYQRIHPDDLAYVQQTIRQHFEARSDHYEVEHRIRCQDGSYKWISSRGKVVARDAQG 284

Query: 301 NALRMIGTTTDITEVRRLTEKLAKSSRMLDYLTSEIPGMVFQFRVPPGERGYFTYVSEGA 360
           NALRMIGTTTDITE++RLTEKL KSSRMLDYLTSEIPGMVFQF+VPPG  GYFTYVSEGA
Sbjct: 285 NALRMIGTTTDITEIKRLTEKLGKSSRMLDYLTSEIPGMVFQFKVPPGAPGYFTYVSEGA 344

Query: 361 RETYGLTPQQLLETPVIIDTVIHPEDMPLYEAARQAVLAGASHWMLEFRVITPGNGVRWL 420
           RETYGLTPQQLLE P IIDTVIHP+DMPLYEAAR+AVL GA+HW LEFRV+ PG GVRWL
Sbjct: 345 RETYGLTPQQLLENPAIIDTVIHPDDMPLYEAAREAVLGGAAHWTLEFRVLPPGQGVRWL 404

Query: 421 RGXA 424
           RG +
Sbjct: 405 RGQS 408


>gi|300313029|ref|YP_003777121.1| two component hybrid sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1524

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 26/184 (14%)

Query: 151 PGDASHLEQAYRDTVGAAVSMA-----------------MLAIERSLVPVHARVKSDPPG 193
           PG  SH E  YR   GA + +A                  +A++ SL     R ++    
Sbjct: 698 PGQDSHTELLYRRHDGATLPVARQQTSMFDHRQRHLGYLYIALDVSL----QRQQASALA 753

Query: 194 EADERMALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYED---WELSSHLQDAYQRIHP 250
            A +++ LA E +  G+W  +  +  + Y+     I G+ D       S   D  +R+HP
Sbjct: 754 AARDQLVLAAEVAKLGVWVWDKDSDVLEYNPQVAEIYGFGDRGGAPRVSTYADWRRRVHP 813

Query: 251 DDLPYVQETIRQHFASRSDTYQVEHRIRCRDGSYKWISSRGKVVARDAEGNALRMIGTTT 310
           DD+ YV++T+R   A   D   V   +R  DG  +++ +R   V RD  G  +R+I    
Sbjct: 814 DDVDYVEKTLRAGLAVDGDHEPVFRVVR-DDGGIRYVQARA-YVQRDGAGRPVRVICINL 871

Query: 311 DITE 314
           DIT+
Sbjct: 872 DITQ 875


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,382,249
Number of extensions: 58443
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 2
Length of query: 424
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 336
Effective length of database: 1,203,190
Effective search space: 404271840
Effective search space used: 404271840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)