BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0168.p (581 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 593 e-170 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 551 e-158 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 545 e-156 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 543 e-155 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 530 e-151 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 593 bits (1530), Expect = e-170, Method: Compositional matrix adjust. Identities = 346/591 (58%), Positives = 431/591 (72%), Gaps = 22/591 (3%) Query: 1 MNWFYDLRIARKLLLTFATILLLTGVLGVFSIVQLSRVNDASTEIATNSLPSVRYPLEAK 60 M WFYDLRI+RKL+ TF ++ + LGVFSI QL +VN ASTEI+TN LPS+R + Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 VALARIRTVQLQHLLPGNEANVEANEKVIGDMLAGLNKALDKYEPLVNMPDERTYFSAIK 120 +A++R+R+ +LQH+L + E E+ + + L A +Y ++ P+E+ + ++ Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 SDLAVFTKQHQELAKLVRGQQIDQARELLMKQITPVYLRLFDNMDKAVAINIDASEKTDQ 180 +A F +H ++ L R + ++AR L + T Y +DK A+N ++ +++ Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 EAQVRYENSRLLIGVLLAACIGLGLLLATWVARIVSRPLQEAMHVAERVAEGDLTVHIQP 240 +A Y +RL I V +AACIGL +LLA WV+R+++RPL+EA+ VA+RVA GDLT I+P Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 AGRDETGRLMGSLKAMNDSLLRIVTQVREGTDTINTASREIASGNLDLSSRTEQQASSLE 300 AG+DETG+L+ +LK+MNDSL+ IV QVR GT TI TAS EIASGNLDLSSRTE+QASSLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 301 ETASAMEEITSTVKQNADNARQANQLAHSASDVATQGGSVVSQVVDTMGAINASSRKIVD 360 ETASAMEE+TSTVKQNADNARQANQLA SAS+VA+QGG+VV+QVVDTMG+INASSRKI D Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 421 SVAKVDTGSRLVEQAGSTMTEVVASVRRVTDIVSEITAASSEQSNGIEQVNLAITQMDEV 480 SVA+VD GS+LVE+AG TM+EVV SVRRVTDIV EI++AS EQS GIEQVNLAI QMDEV Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 481 TQQNAALVEQAAAAAGSLQDQAGRLSELVSVFKLER------AHAAAQAAPVAARSAALS 534 TQQNAALVE+AAAAA SLQ+QA L++ V FKLE+ + +AA V AR+AA+ Sbjct: 481 TQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPPVRAASV-ARTAAVR 539 Query: 535 PKPQARPQPKPAVRTTAAAPA----LPPAPAPKAGKAAKAPSADEGDWEQF 581 P RP A A PA LP G AA+ D G WEQF Sbjct: 540 HAPATRPAATLAASAAPAKPASGSRLP-------GGAAE----DGGSWEQF 579 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 551 bits (1420), Expect = e-158, Method: Compositional matrix adjust. Identities = 321/582 (55%), Positives = 409/582 (70%), Gaps = 16/582 (2%) Query: 1 MNWFYDLRIARKLLLTFATILLLTGVLGVFSIVQLSRVNDASTEIATNSLPSVRYPLEAK 60 MNWFY+ RIA KLLL FA +LLLTG LG+FSIVQL +VN A+TE+ATN LPS+R + K Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 61 VALARIRTVQLQ-HLLPGNEANVEANEKVIGDMLAGLNKALDKYEPLVNMPDERTYFSAI 119 VAL+R+R Q Q L G+E A ++ L L +A +Y ++ P E+ F + Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 120 KSDLAVFTKQHQELAKLVRGQQIDQARELLMKQITPVYLRLFDNMDKAVAINIDASEKTD 179 + + F H + VR ++D+A+ LL+ YL L +++DK +N+D S ++ Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 Query: 180 QEAQVRYENSRLLIGVLLAACIGLGLLLATWVARIVSRPLQEAMHVAERVAEGDLTVHIQ 239 + A+ Y+ +++ + +L + GL LA ++AR+++ PL+ A A +A GDLT I Sbjct: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 Query: 240 PAGRDETGRLMGSLKAMNDSLLRIVTQVREGTDTINTASREIASGNLDLSSRTEQQASSL 299 DETG+L +L AMN SL RIV+QVR GTD I TAS +I+SGNLDLSSRTE+QASSL Sbjct: 241 ARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 Query: 300 EETASAMEEITSTVKQNADNARQANQLAHSASDVATQGGSVVSQVVDTMGAINASSRKIV 359 EETASAMEE+TSTV+QNA+NARQANQLA SAS +A +GG VVSQV++TMG+I+ASS+KIV Sbjct: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 Query: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLID 419 DIISVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIKTLID Sbjct: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 Query: 420 DSVAKVDTGSRLVEQAGSTMTEVVASVRRVTDIVSEITAASSEQSNGIEQVNLAITQMDE 479 +SV +V GS LV++AG T++EVV+SV+RVTD++SEI+AAS EQ+ GIEQVN AITQMDE Sbjct: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 Query: 480 VTQQNAALVEQAAAAAGSLQDQAGRLSELVSVFKLERAHAAAQAAPVAARSAALSPKPQA 539 VTQQNAALVE+AA+A+ SL QA RLSELV VF+L A +AA + P+ Sbjct: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPGAARQQVPEVAVVATAAPAYTPR- 539 Query: 540 RPQPKPAVRTTAAAPALPPAPAPKAGKAAKAPSADEGDWEQF 581 +P A T+ A PAL A P DE WE F Sbjct: 540 --RPAVAGATSTATPALAVAQGP-----------DE-QWETF 567 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 545 bits (1403), Expect = e-156, Method: Compositional matrix adjust. Identities = 316/582 (54%), Positives = 414/582 (71%), Gaps = 12/582 (2%) Query: 1 MNWFYDLRIARKLLLTFATILLLTGVLGVFSIVQLSRVNDASTEIATNSLPSVRYPLEAK 60 MNWFY+L+IA KL F +L+ LG FS ++L+ VN +ST+IA N LPS+ + Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 VALARIRTVQLQHLLPGNEANVEANEKVIGDMLAGLNKALDKYEPLVNMPDERTYFSAIK 120 +ALAR R+ +Q LL ++ +A+ + +A L K + +Y LV+ P E+ + I+ Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 SDLAVFTKQHQELAKLVRGQQIDQARELLMKQITPVYLRLFDNMDKAVAINIDASEKTDQ 180 ++A++ + H+ ++ L Q A L+ TPVY +L + + + +N + +D Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 EAQVRYENSRLLIGVLLAACIGLGLLLATWVARIVSRPLQEAMHVAERVAEGDLTVHIQP 240 +A Y + + I L+ C+ L + L+ W+AR+V+RPL A+ +A +VA GDLT I Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 241 AGRDETGRLMGSLKAMNDSLLRIVTQVREGTDTINTASREIASGNLDLSSRTEQQASSLE 300 A RDETG+L+ +L+ MN +LL IV +VR+GTDTI TAS EIA+GN+DLSSRTEQQA +LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 301 ETASAMEEITSTVKQNADNARQANQLAHSASDVATQGGSVVSQVVDTMGAINASSRKIVD 360 ETASAMEE+TSTV+QN+DNARQANQLA +AS+VA GG+VV +VV TM AIN SSRKIVD Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAA EIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 421 SVAKVDTGSRLVEQAGSTMTEVVASVRRVTDIVSEITAASSEQSNGIEQVNLAITQMDEV 480 SVAKVDTGS+LV++AG TM EVVASV+RV+DIV+EITAA +EQ+ GIEQ+N A+ QMDE Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 481 TQQNAALVEQAAAAAGSLQDQAGRLSELVSVFKLERAHAAAQAAPVAARSAALSPKPQAR 540 TQQNAALVEQAAAAA +LQ+QAGRLSE VSVF+L+ AQ PV AA + +P+ Sbjct: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLD-----AQHVPVVVSRAAATAQPERD 535 Query: 541 PQP-KPAVRTTAAAPALPPAPAPKAGKAAKAPSADEGDWEQF 581 P +PA+ + + PA + + SA++GDWEQF Sbjct: 536 ITPARPALAQSRSKVMARPAHSNTSA------SAEQGDWEQF 571 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 543 bits (1399), Expect = e-155, Method: Compositional matrix adjust. Identities = 310/516 (60%), Positives = 390/516 (75%) Query: 1 MNWFYDLRIARKLLLTFATILLLTGVLGVFSIVQLSRVNDASTEIATNSLPSVRYPLEAK 60 M WF +L+IA+KL+++FA +++LT +LG+F+I +L VN AST++ATN LP+++ + Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 VALARIRTVQLQHLLPGNEANVEANEKVIGDMLAGLNKALDKYEPLVNMPDERTYFSAIK 120 +L R+R +LQ + A E K I L L K YE ++ +E+ + Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 SDLAVFTKQHQELAKLVRGQQIDQARELLMKQITPVYLRLFDNMDKAVAINIDASEKTDQ 180 A + + +ELA++ + ++AR L + + +NMD+ + +N S+++D Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 EAQVRYENSRLLIGVLLAACIGLGLLLATWVARIVSRPLQEAMHVAERVAEGDLTVHIQP 240 A+ Y ++ L I LLAA + + L LA VAR VSRPL EA+ VAERVA+GDLT+ I+ Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 AGRDETGRLMGSLKAMNDSLLRIVTQVREGTDTINTASREIASGNLDLSSRTEQQASSLE 300 DETG LM SL+AMNDSL +IV +VR GTDTI TAS+EIA+GNLDLSSRTE+QA SLE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 301 ETASAMEEITSTVKQNADNARQANQLAHSASDVATQGGSVVSQVVDTMGAINASSRKIVD 360 ETASAMEE+T+TVKQNADNARQANQLA SASD+ATQGG+VV QVV TM I SS +I D Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 421 SVAKVDTGSRLVEQAGSTMTEVVASVRRVTDIVSEITAASSEQSNGIEQVNLAITQMDEV 480 SV KV GS+LVE+AG+TM+EVVASVRRVTD+V+EI+AAS+EQS GIE++N AITQMDEV Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 481 TQQNAALVEQAAAAAGSLQDQAGRLSELVSVFKLER 516 TQQNAALVE+AAAAA SLQDQA RLS++VSVFKL+R Sbjct: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQR 516 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 530 bits (1366), Expect = e-151, Method: Compositional matrix adjust. Identities = 302/515 (58%), Positives = 374/515 (72%) Query: 1 MNWFYDLRIARKLLLTFATILLLTGVLGVFSIVQLSRVNDASTEIATNSLPSVRYPLEAK 60 M WFY+L IA+KL L+FA ++ LT + G+F+I +L +VN AS EI + +P++ E + Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 VALARIRTVQLQHLLPGNEANVEANEKVIGDMLAGLNKALDKYEPLVNMPDERTYFSAIK 120 +L +R +L+ + A K I D L L + +E ++ P E+ ++ Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 121 SDLAVFTKQHQELAKLVRGQQIDQARELLMKQITPVYLRLFDNMDKAVAINIDASEKTDQ 180 +L + K ++LA++ QQ D+ R L +Y + N+D V IN S + D+ Sbjct: 121 KNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADE 180 Query: 181 EAQVRYENSRLLIGVLLAACIGLGLLLATWVARIVSRPLQEAMHVAERVAEGDLTVHIQP 240 EA + ++ I LLAA + + LLA VA VSRPL+EA+ +A+RVA GDLT+ I+P Sbjct: 181 EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRP 240 Query: 241 AGRDETGRLMGSLKAMNDSLLRIVTQVREGTDTINTASREIASGNLDLSSRTEQQASSLE 300 AGRDETG LM +L+AMN+SL IV++VR+GTDTI TAS EIA GNLDLS+RTEQQA SLE Sbjct: 241 AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLE 300 Query: 301 ETASAMEEITSTVKQNADNARQANQLAHSASDVATQGGSVVSQVVDTMGAINASSRKIVD 360 ETASAMEE+TSTV QNADNARQANQLA +ASD+A+QGG VV QVV TM I SSR+I D Sbjct: 301 ETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 Query: 421 SVAKVDTGSRLVEQAGSTMTEVVASVRRVTDIVSEITAASSEQSNGIEQVNLAITQMDEV 480 SV KV GS LVE+AGSTMTEVVASVRRVTD+V+EI+AA+ EQS GI +VNLAITQMDE Sbjct: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 Query: 481 TQQNAALVEQAAAAAGSLQDQAGRLSELVSVFKLE 515 TQQNAALVEQAAAAA SL+ QA L+ +V FKL+ Sbjct: 481 TQQNAALVEQAAAAADSLKGQASNLAAVVGKFKLD 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.126 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,129,803 Number of extensions: 36935 Number of successful extensions: 564 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 268 Number of HSP's successfully gapped: 71 Length of query: 581 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 491 Effective length of database: 1,193,720 Effective search space: 586116520 Effective search space used: 586116520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)