BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0166.p
         (261 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312308|ref|YP_003776400.1| transmembrane protein [Herbaspi...   532   e-152

>gi|300312308|ref|YP_003776400.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 266

 Score =  532 bits (1370), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 254/261 (97%), Positives = 259/261 (99%)

Query: 1   LKFFIIGFALSLTACGLLPEQKDETVGWSASKLYSEAKDELNAGGYDKAIKYFEKLESRY 60
           LKFFIIGFALSLTACGLLPEQKDET GWSA+KLYSEAKDELNAGGYDKAIKYFEKLESRY
Sbjct: 6   LKFFIIGFALSLTACGLLPEQKDETTGWSAAKLYSEAKDELNAGGYDKAIKYFEKLESRY 65

Query: 61  PFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRTS 120
           PFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRTS
Sbjct: 66  PFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRTS 125

Query: 121 IFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPDSKYTPDAIARMKYLVNAMSQYDVHVA 180
           IFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPDSKYTPDAIARMKYLVNAMSQYDVHVA
Sbjct: 126 IFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPDSKYTPDAIARMKYLVNAMSQYDVHVA 185

Query: 181 NYYFRRGAYVSAANRAQAAIKQYPDSPANEEALFILMRSYEALGQTKLKEDTERIIQATY 240
           +YYFRRGAYVSAANRAQ+AIKQYPDSPANEEALFILMRSYEALGQTKLKEDTERIIQATY
Sbjct: 186 SYYFRRGAYVSAANRAQSAIKQYPDSPANEEALFILMRSYEALGQTKLKEDTERIIQATY 245

Query: 241 PNSPWYNGGPKQKAKPWWKVW 261
           PNSPWYNGGPK K+KPWWK+W
Sbjct: 246 PNSPWYNGGPKPKSKPWWKLW 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 803,587
Number of extensions: 30958
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 178
Effective length of database: 1,226,865
Effective search space: 218381970
Effective search space used: 218381970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)