BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0162.p
         (291 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312304|ref|YP_003776396.1| permease [Herbaspirillum serope...   345   3e-96

>gi|300312304|ref|YP_003776396.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 260

 Score =  345 bits (884), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/240 (78%), Positives = 211/240 (87%)

Query: 31  MPSLLSLVDMNATMLAMSLAVFLLAGFVKGVIGLGLPTVAVGLLSLVMPPVQAAALLILP 90
           M S LS +DM+AT+L  SL VF+LAGFVKG IGLGLPTVAVGLLSL+MPPVQAA LLI+P
Sbjct: 1   MSSFLSSIDMSATVLPASLPVFMLAGFVKGSIGLGLPTVAVGLLSLMMPPVQAAPLLIVP 60

Query: 91  SMVTNGWQLVTGGAFLMLAKRLWTLLAGVVTGTLAGAGFMRGDGGRHAIVVLGVALMLYA 150
           SMVTNGWQL+TGGA   L +RLWTLLAG+V GTLAG  FM  DGGR AI+VLG+AL+LYA
Sbjct: 61  SMVTNGWQLLTGGALRALVRRLWTLLAGIVLGTLAGGSFMNADGGRRAIIVLGLALVLYA 120

Query: 151 LAGLAAWTPTVPPQRERWWSPVIGLVTGLVTAATGVFVIPVVPYLQALGLPRDQLIQALG 210
           LAGLA+WTP+V P +E+WWSP +GL TGLVTAATGVFVIP VPYLQALGLPR+QLIQALG
Sbjct: 121 LAGLASWTPSVSPAQEQWWSPAVGLATGLVTAATGVFVIPAVPYLQALGLPREQLIQALG 180

Query: 211 LSFTVSTLALAVNLGQGGAFSAGVGWASLIVLVPALLGMAIGTRVRTWVRPATFRRCFFI 270
           LSFTVSTLALAVNLGQGGAFS GVGWASL++L+PALLGM+IG RVR  V+  TFRRCFFI
Sbjct: 181 LSFTVSTLALAVNLGQGGAFSGGVGWASLVLLLPALLGMSIGARVRGRVQAVTFRRCFFI 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.143    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 866,266
Number of extensions: 36171
Number of successful extensions: 259
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 207
Effective length of database: 1,222,130
Effective search space: 252980910
Effective search space used: 252980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)