BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0140.p
         (168 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312282|ref|YP_003776374.1| hypothetical protein Hsero_2978...   264   4e-72
gi|300312418|ref|YP_003776510.1| signal peptide protein [Herbasp...    75   3e-15

>gi|300312282|ref|YP_003776374.1| hypothetical protein Hsero_2978
           [Herbaspirillum seropedicae SmR1]
          Length = 182

 Score =  264 bits (674), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 144/162 (88%), Positives = 145/162 (89%), Gaps = 11/162 (6%)

Query: 1   MKKHLTLIALLGALFATAGITAAHAETDTKPAAKKKVVKKAAPAAK-----------MPF 49
           MKKHLTLIALLGALFATAGITAAHAETDTKPAAKKKVVKKA                MPF
Sbjct: 1   MKKHLTLIALLGALFATAGITAAHAETDTKPAAKKKVVKKAPAKKAAAAAAAAPAAKMPF 60

Query: 50  SSDAEDDDSEPELGGTLSADFQCEMGHKLTIWKNEADDKHIAIRWDKRIHRLTRVETTTG 109
           SSDAEDDDSEPELGGTLSADFQCEMGHKLTIWKNE DDKHIAIRWDKRIHRLTRVETTTG
Sbjct: 61  SSDAEDDDSEPELGGTLSADFQCEMGHKLTIWKNETDDKHIAIRWDKRIHRLTRVETTTG 120

Query: 110 ANRFENRKMGLVWIGIPAKGLLLDSKKGQQLANECKNAEQIK 151
           ANRFENRKMGLVWIGIPAKGLLLDSKKGQQLANECKNA+QIK
Sbjct: 121 ANRFENRKMGLVWIGIPAKGLLLDSKKGQQLANECKNADQIK 162


>gi|300312418|ref|YP_003776510.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score = 75.1 bits (183), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 50/76 (65%)

Query: 70  FQCEMGHKLTIWKNEADDKHIAIRWDKRIHRLTRVETTTGANRFENRKMGLVWIGIPAKG 129
           F CEMG+K+ +  +      + + W  + + +  V T+TGA R EN+  GLVWI IP+K 
Sbjct: 66  FSCEMGNKVELRMDGRVTDGVTLVWKGKNYMMNPVSTSTGAVRLENKGEGLVWIQIPSKS 125

Query: 130 LLLDSKKGQQLANECK 145
           +LL++K GQQLAN+C+
Sbjct: 126 MLLNAKIGQQLANDCR 141


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.127    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 358,829
Number of extensions: 9906
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 2
Length of query: 168
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,245,805
Effective search space: 110876645
Effective search space used: 110876645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)