BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0138.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312280|ref|YP_003776372.1| malate dehydrogenase [Herbaspir...   663   0.0  

>gi|300312280|ref|YP_003776372.1| malate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/324 (99%), Positives = 323/324 (99%)

Query: 1   MRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIPDEKAQKALKGVIMEIDDCAF 60
           MRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIPDEKAQKALKGVIMEIDDCAF
Sbjct: 6   MRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIPDEKAQKALKGVIMEIDDCAF 65

Query: 61  PLLAGVTAHSDPMTAFKDADIALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASR 120
           PLLAGVTAHSDPMTAFKDADIALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASR
Sbjct: 66  PLLAGVTAHSDPMTAFKDADIALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASR 125

Query: 121 NVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQVAAKIGKPVSAIEKLC 180
           NVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQVAAKIGKPVSAIEKLC
Sbjct: 126 NVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQVAAKIGKPVSAIEKLC 185

Query: 181 VWGNHSPTMYADYRFATADGASVKDTINDQEWNKNVFLPTVGKRGAAIIEARGLSSAASA 240
           VWGNHSPTMYADYRFATADG SVKDTINDQEWNKNVFLPTVGKRGAAIIEARGLSSAASA
Sbjct: 186 VWGNHSPTMYADYRFATADGVSVKDTINDQEWNKNVFLPTVGKRGAAIIEARGLSSAASA 245

Query: 241 ANAAIDHVRDWVLGTNGKWTTMGIPSDGSYGIPEGTMFGFPVTTENGEYKIVQGLEIDEF 300
           ANAAIDHVRDWVLGTNGKWTTMGIPSDGSYGIPEGTMFGFPVTTENGEYKIVQGLEIDEF
Sbjct: 246 ANAAIDHVRDWVLGTNGKWTTMGIPSDGSYGIPEGTMFGFPVTTENGEYKIVQGLEIDEF 305

Query: 301 SQERINITLKELLEEREGVKHLVG 324
           SQERINITLKEL+EEREGVKHLVG
Sbjct: 306 SQERINITLKELMEEREGVKHLVG 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,007,328
Number of extensions: 41166
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)