BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0137.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312279|ref|YP_003776371.1| GntR family transcription regul...   539   e-155
gi|300313880|ref|YP_003777972.1| transcription regulator protein...   144   8e-36

>gi|300312279|ref|YP_003776371.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  539 bits (1388), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 263/267 (98%), Positives = 264/267 (98%)

Query: 1   VVKFEVMSSILPNSNNVDAQAAGAGVASPAPTFSPLYQQIKALIMQRLEAGEWKPGELIP 60
           VVKFEVMSSILPNSNN DA AAGAGVASPAPTFSPLYQQIKALIMQRLEAGEWKPGELIP
Sbjct: 68  VVKFEVMSSILPNSNNADAHAAGAGVASPAPTFSPLYQQIKALIMQRLEAGEWKPGELIP 127

Query: 61  SEVELGSRFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHETQAQFRFLRLMADSDE 120
           SEVELGSRFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHETQAQFRFLRLMADSDE
Sbjct: 128 SEVELGSRFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHETQAQFRFLRLMADSDE 187

Query: 121 PQRPENKIIEVKRVRASAEVARQLDMKSGDSVIFIRRVKSFNGTPIILEDIWLPGAIFKG 180
           PQRPENKIIEVKRVRASAEVARQLDMKSGDSVIFIRRVKSFNG PIILEDIWLPGAIFKG
Sbjct: 188 PQRPENKIIEVKRVRASAEVARQLDMKSGDSVIFIRRVKSFNGVPIILEDIWLPGAIFKG 247

Query: 181 LTAERLMEYRGPLYGLFESEFGTRMIRAEERIRAVGADPDAAEFLGVTPQTPLLSVERAS 240
           LTAERL+EYRGPLYGLFESEFGTRMIRAEERIRAVGADPDAAEFLGVTPQTPLLSVERAS
Sbjct: 248 LTAERLVEYRGPLYGLFESEFGTRMIRAEERIRAVGADPDAAEFLGVTPQTPLLSVERAS 307

Query: 241 FTYGDKPVEMRRGLYLTTNHHYQSELS 267
           FTYGDKPVEMRRGLYLTTNHHYQSELS
Sbjct: 308 FTYGDKPVEMRRGLYLTTNHHYQSELS 334


>gi|300313880|ref|YP_003777972.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  144 bits (363), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 128/232 (55%)

Query: 35  PLYQQIKALIMQRLEAGEWKPGELIPSEVELGSRFKVSQGTVRKAIDELAAENLVVRRQG 94
           PLY Q++ L+  ++ A +W+PG+ IPSE EL   ++V+ GTVR+AI+ L AE LV R  G
Sbjct: 12  PLYLQLRDLLATQIRAQKWQPGQPIPSEAELSQTYQVAVGTVRRAIETLMAEGLVERTHG 71

Query: 95  KGTFVATHHETQAQFRFLRLMADSDEPQRPENKIIEVKRVRASAEVARQLDMKSGDSVIF 154
           +GTFV       + FRF R  +    P  P++ I+  K V A A+ A  L +K    VI 
Sbjct: 72  RGTFVRKARFDNSLFRFFRFESADGRPLAPKSVIVSRKLVEAPAQAAEALQLKPHAKVIE 131

Query: 155 IRRVKSFNGTPIILEDIWLPGAIFKGLTAERLMEYRGPLYGLFESEFGTRMIRAEERIRA 214
           + R++  +G P++ E+I+L    FK L  +   E+   LY L+E E G  +  A E +  
Sbjct: 132 LHRLRMVDGQPVLAENIYLCAQRFKALADKAPEEFGDLLYPLYERECGLIVASARETLTV 191

Query: 215 VGADPDAAEFLGVTPQTPLLSVERASFTYGDKPVEMRRGLYLTTNHHYQSEL 266
                  A+ LG+T +TP++ +ER +F    +P+E R+     +   Y +E+
Sbjct: 192 ETVTAAQAKLLGLTEKTPVVMIERIAFGSDGQPLEWRQSRGAASKFRYSAEI 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 742,618
Number of extensions: 28676
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 3
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)