BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0133.p (592 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312277|ref|YP_003776369.1| succinate dehydrogenase flavopr... 1216 0.0 gi|300311535|ref|YP_003775627.1| L-aspartate oxidase [Herbaspiri... 244 2e-65 >gi|300312277|ref|YP_003776369.1| succinate dehydrogenase flavoprotein subunit [Herbaspirillum seropedicae SmR1] Length = 592 Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 585/592 (98%), Positives = 588/592 (99%) Query: 1 VAAIKSAITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA 60 +AAIKSAITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA Sbjct: 1 MAAIKSAITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA 60 Query: 61 SLGNMSEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIY 120 SLGNMSEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIY Sbjct: 61 SLGNMSEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIY 120 Query: 121 QRPFGGHTANLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDVIRNEEG 180 QRPFGGHTANLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALD+IRNEEG Sbjct: 121 QRPFGGHTANLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEG 180 Query: 181 DVLGVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQD 240 DVLGVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQD Sbjct: 181 DVLGVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQD 240 Query: 241 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQ 300 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQ Sbjct: 241 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQ 300 Query: 301 EIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQ 360 EIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQ Sbjct: 301 EIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQ 360 Query: 361 MGGIPTNIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAG 420 MGGIPTNIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAG Sbjct: 361 MGGIPTNIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAG 420 Query: 421 NHIVGSRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRT 480 NHIVGSRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRT Sbjct: 421 NHIVGSRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRT 480 Query: 481 DALLKEGVEKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAEARKES 540 DALL+EG KIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSA ARKES Sbjct: 481 DALLQEGYTKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKES 540 Query: 541 RGAHAQSDYEQRDDVNWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 RGAHA SDYEQRDDVNWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF Sbjct: 541 RGAHAHSDYEQRDDVNWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 >gi|300311535|ref|YP_003775627.1| L-aspartate oxidase [Herbaspirillum seropedicae SmR1] Length = 534 Score = 244 bits (622), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 191/560 (34%), Positives = 288/560 (51%), Gaps = 65/560 (11%) Query: 12 RFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWY 71 + D I+G+G +G+ +L LAE V V+SK + AQGGI A L S D+ Sbjct: 2 KCDVAILGSGLAGLSVALHLAEK-YQVVVVSKGELLDGASNWAQGGIAAVLD--SHDSHA 58 Query: 72 WHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGHTANL 131 H+ DT+ L D+ A + + +A+ L G+PF R+ + G H Sbjct: 59 QHIADTLVAGAGLCDESATRTIVEQGREAIEWLIEQGVPFTRDDSAEL-----GYHLTRE 113 Query: 132 GEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFV--EWMALDVIRNEEGD------VL 183 G +R AAD TGHA+ TL QR VRA + + A+D+I + D L Sbjct: 114 GGHSQRRIIHAADATGHAVQVTLEQR-VRAHPNITLLEHHCAIDLIHARKLDAKAEPRCL 172 Query: 184 GVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEF 243 GV + +G+++ + A T+ ATGGAG+++ ++N TGDG+ MA RAG + +MEF Sbjct: 173 GVHVQDTASGKVLAIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEF 232 Query: 244 WQFHPTGV---AGAGVLITEGVRGEGGILI------NSNGERFMERYAPTLKDLAPRDFV 294 QFHPT + LI+E +RGEG +L + G+RFM + +LAPRD V Sbjct: 233 IQFHPTCLYHPYAKSFLISEALRGEGALLKLPLSAGAAAGQRFMPEHDER-AELAPRDVV 291 Query: 295 SRSMDQEIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVV 354 +R++D E+K+ RG+ DHV LD+ H I + P+I +F +D T++PIPVV Sbjct: 292 ARAIDFEMKK-RGL----DHVDLDISHQSPAFIAEHFPTIQARCLEF-GIDITRQPIPVV 345 Query: 355 PTIHYQMGGIPTNIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVV 414 P HY GG+ T++ G+ P G+YA+GE A +HGANRL +NSLL+ +V Sbjct: 346 PAAHYTCGGVVTDMAGRTDLP----------GLYAVGETAYTGLHGANRLASNSLLECLV 395 Query: 415 FGRAAGNHIVGSRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVA-----NDIRA 469 GRAA D H+ + AG+ ++ + + S ++ ++V +++R Sbjct: 396 LGRAAA--------ADIEHE-LAAGSW--RVDEVPAWDESRVTDADEEVVIAHNWDELRR 444 Query: 470 TMQKYCGVFRTDALLKEGVEKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKA 529 M Y + RTD L+ +I L E + F +R + LEL NL++ A+ Sbjct: 445 FMWNYVSIVRTDKRLERAQHRIRLLKE-----EIDEYYANFRISR-DLLELRNLVDVAQL 498 Query: 530 TITSAEARKESRGAHAQSDY 549 ++SA RKESRG H DY Sbjct: 499 IVSSALMRKESRGLHFSQDY 518 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,953,771 Number of extensions: 88354 Number of successful extensions: 293 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 284 Number of HSP's successfully gapped: 2 Length of query: 592 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 501 Effective length of database: 1,188,985 Effective search space: 595681485 Effective search space used: 595681485 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)