BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0128.p
         (415 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312272|ref|YP_003776364.1| dihydrolipoamide succinyltransf...   777   0.0  
gi|300310786|ref|YP_003774878.1| dihydrolipoamide acetyltransfer...   171   1e-43

>gi|300312272|ref|YP_003776364.1| dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex protein [Herbaspirillum
           seropedicae SmR1]
          Length = 413

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/415 (99%), Positives = 413/415 (99%), Gaps = 2/415 (0%)

Query: 1   MAQIEVKVPQLSESVAEATLLQWHKKVGEPVARDENLIDIETDKVVLELPSPDAGVITQI 60
           MAQIEVKVPQLSESVAEATLLQWHKKVGEPV+RDENLIDIETDKVVLELPSPDAGVITQI
Sbjct: 1   MAQIEVKVPQLSESVAEATLLQWHKKVGEPVSRDENLIDIETDKVVLELPSPDAGVITQI 60

Query: 61  IKADGATVVAGEVIAILDTDASAQVAPTEVKAAPAPQSTNEPTPVAAPELASKXKGDVAM 120
           IKADGATVVAGEVIAILDTDASAQVAPTEVKAAPAPQ+TNEPTPVAAPELASK  GDVAM
Sbjct: 61  IKADGATVVAGEVIAILDTDASAQVAPTEVKAAPAPQATNEPTPVAAPELASK--GDVAM 118

Query: 121 PAAAKLLADNNLSTSQVTGTGKDGRVTKGDVLGALSAPAAAPAAAAKPALAQVAAPVKAG 180
           PAAAKLLADNNLSTSQVTGTGKDGRVTKGDVLGALSAPAAAPAAAAKPALAQVAAPVKAG
Sbjct: 119 PAAAKLLADNNLSTSQVTGTGKDGRVTKGDVLGALSAPAAAPAAAAKPALAQVAAPVKAG 178

Query: 181 LESRPEQRVPMSRLRARVAERLVQSQSTNAILTTFNEINMQPVIDLRNKYKDKFEKEHGV 240
           LESRPEQRVPMSRLRARVAERLVQSQSTNAILTTFNEINMQPVIDLRNKYKDKFEKEHGV
Sbjct: 179 LESRPEQRVPMSRLRARVAERLVQSQSTNAILTTFNEINMQPVIDLRNKYKDKFEKEHGV 238

Query: 241 KLGFMSFFVKAVVHALKKYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVPILRDADQM 300
           KLGFMSFFVKAVVHALKKYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVPILRDADQM
Sbjct: 239 KLGFMSFFVKAVVHALKKYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVPILRDADQM 298

Query: 301 SIADIEKKIGEFGQKAKDGKLSIEELSGGTFTVSNGGTFGSMLSTPIINPPQSAILGIHA 360
           SIADIEKKIGEFGQKAKDGKLSIEELSGGTFTVSNGGTFGSMLSTPIINPPQSAILGIHA
Sbjct: 299 SIADIEKKIGEFGQKAKDGKLSIEELSGGTFTVSNGGTFGSMLSTPIINPPQSAILGIHA 358

Query: 361 TKERAVVENGQVVVRPINYFALSYDHRIIDGREAVLSLVAIKEALEDPARLLLDL 415
           TKERAVVENGQVVVRPINYFALSYDHRIIDGREAVLSLVAIKEALEDPARLLLDL
Sbjct: 359 TKERAVVENGQVVVRPINYFALSYDHRIIDGREAVLSLVAIKEALEDPARLLLDL 413


>gi|300310786|ref|YP_003774878.1| dihydrolipoamide acetyltransferase
           component of pyruvate dehydrogenase complex
           [Herbaspirillum seropedicae SmR1]
          Length = 554

 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/414 (32%), Positives = 212/414 (51%), Gaps = 27/414 (6%)

Query: 4   IEVKVPQLSESVAEATLLQWHKKVGEPVARDENLIDIETDKVVLELPSPDAGVITQIIKA 63
           +E++VP + +   E  +++   KVG+ V  +++L+ +E+DK  +E+PS  AGVI ++   
Sbjct: 120 VEIEVPDIGD-FKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELKVK 178

Query: 64  DGATVVAGEVIAILDTDASAQVAPTEVKAAPAPQSTNEPTPVAAPEL------------- 110
            G  V  G +IA ++    A  A      A AP +   P P +AP               
Sbjct: 179 LGDKVSKGSIIATIEAAGGAPAAAPAAAPAAAPAAAAAPAPASAPAPAAAAAVPAIATAS 238

Query: 111 ASKXKGDV-AMPAAAKLLADNNLSTSQVTGTGKDGRV--------TKGDVLGALSAPAAA 161
           A+   G   A P+  K   +  +  S+V  TG  GR+         KG + G+ S  A+A
Sbjct: 239 ATSTGGKAHASPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAASA 298

Query: 162 PAAAAKPALAQVAAPVKAGLESRPEQRV-PMSRLRARVAERLVQSQSTNAILTTFNEINM 220
           PA     A   +            E  + P+SR++      L ++      +T F+E ++
Sbjct: 299 PATNGSGAGMNLLPWPSLDFSKFGETELQPLSRIKKISGPNLHRNWVMIPHVTQFDEADV 358

Query: 221 QPVIDLRNKYKDKFEKEHG-VKLGFMSFFVKAVVHALKKYPIVNASVD--GNDIVYHGYF 277
             + + R    D F K    VKL  ++F +KA V ALKK+P  N+S+D  G +++   ++
Sbjct: 359 TELEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNSSLDAKGENLILKKFY 418

Query: 278 DIGVAVGSPRGLVVPILRDADQMSIADIEKKIGEFGQKAKDGKLSIEELSGGTFTVSNGG 337
           +IG A  +P GLVVP++++ADQ SI  I  ++GE   +A+DGKL   ++ G TFT+S+ G
Sbjct: 419 NIGFAADTPNGLVVPVIKNADQKSIGQIAIEMGELSAQARDGKLKPADMQGATFTISSLG 478

Query: 338 TFGSMLSTPIINPPQSAILGIHATKERAVVENGQVVVRPINYFALSYDHRIIDG 391
             G    TPIIN P+ AILG+  +  + V +  Q V R +   +LSYDHR+IDG
Sbjct: 479 GIGGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRVIDG 532


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,214,868
Number of extensions: 50330
Number of successful extensions: 235
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 4
Length of query: 415
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,203,190
Effective search space: 393443130
Effective search space used: 393443130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)