BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0124.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312269|ref|YP_003776361.1| hypothetical protein Hsero_2965...   338   3e-94

>gi|300312269|ref|YP_003776361.1| hypothetical protein Hsero_2965
           [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  338 bits (868), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 191/289 (66%), Positives = 215/289 (74%), Gaps = 16/289 (5%)

Query: 1   MNKKSMQGLFADVKGVTSSLCGLMLALAAGASMAQGQASASAMSGAQPGRIQAQAQGQVS 60
           M K  MQ  FAD KGV+ SLC L+L LAAG   AQ            P   QA A    +
Sbjct: 1   MIKNDMQVFFADAKGVSVSLCALVLMLAAGGVAAQA-----------PDTRQAAAPAGGA 49

Query: 61  PADAGATPQAAPVAPAPVMSRERFDELEARAPIAQRYPAGSIKSDEAAQKALDEAAEDRQ 120
              A   P  A       M+RERF+++EAR PI QRYPAGSIKS E AQ  LDE AEDRQ
Sbjct: 50  ATAAAPAPVTAAP-----MTRERFEQIEARTPIRQRYPAGSIKSVEMAQAVLDEVAEDRQ 104

Query: 121 VAELRYILDQRACYPKFLVSDCLEAARDRKRLTDKGIKAVEYEAKVFQRQATVDDRDRSL 180
             +LRY+LDQRAC PKFLV+ CLE ARDRKRL +K +K  EYEA VFQRQA VDDRDRSL
Sbjct: 105 AVQLRYVLDQRACAPKFLVNKCLEEARDRKRLAEKDLKQAEYEANVFQRQANVDDRDRSL 164

Query: 181 AEQRAKDEEDSARRLADQKQKEADSARKVQESRTKNSEVQQRIDQNKNVPADYRVRQHEA 240
           A+QRAKD+ED+ARR A+QKQKEADSARKVQES  KN EVQQRID NK+VPADYRVR+HEA
Sbjct: 165 ADQRAKDQEDAARRQAEQKQKEADSARKVQESNAKNREVQQRIDANKDVPADYRVREHEA 224

Query: 241 EVQRQQAEEAARAPSRAANAAERQRRIQEAEEHRLEVERKKAENERERA 289
           + ++Q+AE+AARAP RAANAAERQRRIQEAE+HRLEVER KAE ERERA
Sbjct: 225 KQRQQRAEDAARAPERAANAAERQRRIQEAEQHRLEVERNKAEKERERA 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.121    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 462,398
Number of extensions: 14344
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 130 (54.7 bits)