BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0121.p
         (615 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312268|ref|YP_003776360.1| ATP-dependent DNA helicase [Her...  1115   0.0  

>gi|300312268|ref|YP_003776360.1| ATP-dependent DNA helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 747

 Score = 1115 bits (2884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/630 (89%), Positives = 573/630 (90%), Gaps = 43/630 (6%)

Query: 1   VPALLWGGKTIVSTGTKTLQDQLFNRDIPTVRKALHAPVSVALLKGRSNYVCHFHLERTL 60
           VPALLWGGKTIVSTGTKTLQDQLFNRDIPTVRKALHAPVSVALLKGRSNYVCHFHLERTL
Sbjct: 114 VPALLWGGKTIVSTGTKTLQDQLFNRDIPTVRKALHAPVSVALLKGRSNYVCHFHLERTL 173

Query: 61  QNGRLTAREDVGYLREISHFLXEVILTEISRFVKSTSSGDKAELTKVPETASVWNLVTST 120
           QNGRLTAREDVGYLREIS            RFVKSTSSGDKAELTKVPETASVWNLVTST
Sbjct: 174 QNGRLTAREDVGYLREIS------------RFVKSTSSGDKAELTKVPETASVWNLVTST 221

Query: 121 RDTCFGAECQYYQDCFVMKARKEAQQADVVVVNHHLFFADVALKDTGIAELLPSANTVIF 180
           RDTCFGAECQYYQDCFVMKARKEAQQADVVVVNHHLFFADVALKDTGIAELLPSANTVIF
Sbjct: 222 RDTCFGAECQYYQDCFVMKARKEAQQADVVVVNHHLFFADVALKDTGIAELLPSANTVIF 281

Query: 181 DEAHQLPDTATLFFGETISTSQILELCRDVLAEGLSHARDGADWARLVAPVERAARDLRL 240
           DEAHQLPDTATLFFGETISTSQILELCRDVLAEGLSHARDGADWARLVAPVERAARDLRL
Sbjct: 282 DEAHQLPDTATLFFGETISTSQILELCRDVLAEGLSHARDGADWARLVAPVERAARDLRL 341

Query: 241 AFPEESVRLALNQIAPSSAFFPSLDTLKDCMDDMIAVLEKQAERAETIEQCRDRANELLR 300
           AF E+SVRLALNQIAPSS FFP+LDTLKDCMDDMI VLEKQAERAETIEQCRDRANELLR
Sbjct: 342 AFSEDSVRLALNQIAPSSTFFPALDTLKDCMDDMITVLEKQAERAETIEQCRDRANELLR 401

Query: 301 QLENWGTPDELAKIQAEAAAKAAAKPADNKRAGEGEEQEDSPAQKPFYVLWVEAFQSSLQ 360
           QLENWGTP+EL KIQAEAAAKAAAKPA+ KRA  G+EQ++   QKPFYVLWVEAFQSSLQ
Sbjct: 402 QLENWGTPEELEKIQAEAAAKAAAKPAEAKRAESGDEQQEPSGQKPFYVLWVEAFQSSLQ 461

Query: 361 LHRTPLSIAPIFNKQREGTPRSWIFTSATLAVKKDFNHYAAQMGLWNAPAQSWPSPFNYA 420
           LHRTPLSIAPIFNKQREGTPRSWIFTSATLAVKKDFNHYAAQMGLWNAPAQSWPSPFNY 
Sbjct: 462 LHRTPLSIAPIFNKQREGTPRSWIFTSATLAVKKDFNHYAAQMGLWNAPAQSWPSPFNYG 521

Query: 421 EQGLLYVPQNLPQPNSFEYTDAVIDAALP------------------------------- 449
           EQG+LYVPQNLPQPNSFEYTDAVIDAALP                               
Sbjct: 522 EQGILYVPQNLPQPNSFEYTDAVIDAALPIIEAAGGRCFFLCTTLRAVNRAAERLRAEFE 581

Query: 450 TRGHDFPLFVQGEAGRTELLDRFRAAGNGVLIGSQSFWEGVDVRGDALSLVIIDKLPFSP 509
            RGH FPLFVQGEAGRTELLDRFRAAGNGVLIGSQSFWEGVDVRGDALSLVIIDKLPFSP
Sbjct: 582 ARGHAFPLFVQGEAGRTELLDRFRAAGNGVLIGSQSFWEGVDVRGDALSLVIIDKLPFSP 641

Query: 510 PDDPVLAARISEMEKQGLNGFVHHQLPAAIINLKQGAGRLIRDEGDRGVLMICDPRIITK 569
           PDDPVLAARISEMEKQGLNGFVHHQLPAAIINLKQGAGRLIRDEGDRGVLMICDPRIITK
Sbjct: 642 PDDPVLAARISEMEKQGLNGFVHHQLPAAIINLKQGAGRLIRDEGDRGVLMICDPRIITK 701

Query: 570 NYGRRIWQSLPPFKRTRELEVVQAFFREQD 599
           NYGRRIWQSLPPFKRTRE EVVQAFFREQD
Sbjct: 702 NYGRRIWQSLPPFKRTREQEVVQAFFREQD 731


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,832,025
Number of extensions: 77637
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 2
Length of query: 615
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 524
Effective length of database: 1,188,985
Effective search space: 623028140
Effective search space used: 623028140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)