BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0118.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312265|ref|YP_003776357.1| protein-L-isoaspartate carboxyl...   578   e-166
gi|300309824|ref|YP_003773916.1| protein-L-isoaspartate O-methyl...    80   2e-16

>gi|300312265|ref|YP_003776357.1| protein-L-isoaspartate
           carboxylmethyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 321

 Score =  578 bits (1491), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 295/321 (91%), Positives = 297/321 (92%), Gaps = 17/321 (5%)

Query: 1   MSDKPSRFPLSLSSVVDKKKTANAGRDAAGRPQATTQTAAKNAAQSSQRAALKPVQQGLA 60
           MSDK SRFPLSLSSVVDKKK A  GRDAAGRPQATTQTAAKNAAQSSQRAALKPVQQGLA
Sbjct: 1   MSDKTSRFPLSLSSVVDKKKAAGVGRDAAGRPQATTQTAAKNAAQSSQRAALKPVQQGLA 60

Query: 61  QX-----------------LLSAAPVPRTAVRNVMTVTQTNASHHASPLASEAVRKAMVA 103
           Q                  LLSAAPVPRTAV NVMTVTQTNASHHASPLASEAVRKAMVA
Sbjct: 61  QALRPPPAPPRAPVPPAQPLLSAAPVPRTAVSNVMTVTQTNASHHASPLASEAVRKAMVA 120

Query: 104 RVAKQGVADAKVLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIELM 163
           RVAKQGVADAKVLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIE+M
Sbjct: 121 RVAKQGVADAKVLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIEIM 180

Query: 164 RQNRHGGRLDRVLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRL 223
           RQNRHGGRLDRVLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRL
Sbjct: 181 RQNRHGGRLDRVLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRL 240

Query: 224 HYGDGMLGLPQVAPFDGIILAAAGLEVPQALLEQLAIGGRLVAPVGERQQVLELIERVGQ 283
           HYGDGMLGLPQVAPFDGIILAAAGLEVPQALLEQLA+GGRLVAPVGERQQVLELIERVG 
Sbjct: 241 HYGDGMLGLPQVAPFDGIILAAAGLEVPQALLEQLAVGGRLVAPVGERQQVLELIERVGP 300

Query: 284 RDWRRTTLEQCHFVPLRPGTV 304
           RDWRRTTLEQCHFVPLRPGTV
Sbjct: 301 RDWRRTTLEQCHFVPLRPGTV 321


>gi|300309824|ref|YP_003773916.1| protein-L-isoaspartate
           O-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 96/191 (50%), Gaps = 9/191 (4%)

Query: 115 VLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIELMRQNRHGGRLDR 174
           VL  L  V R  FV     S A+ D  +P+   + +  P I AR+++     +H    + 
Sbjct: 25  VLDLLMVVKREEFVPAAHRSLAFFDTEIPLPGGENMLAPKIEARILQEANVKKH----EY 80

Query: 175 VLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRLHYGDGMLGL-- 232
           VLEIG G GY AA+L+  A  V ++E    L  LA+ NL    VAN+ +  G+G  G   
Sbjct: 81  VLEIGAGSGYMAALLAHKARHVTTVEISPELKALAERNLSDYGVANVDVQLGNGAQGWVG 140

Query: 233 --PQVAPFDGIILAAAGLEVPQALLEQLAIGGRLVAPVGERQQV-LELIERVGQRDWRRT 289
              + A +D I+++ +   +P+A  +QL IGGRL+A VG    + L+LI R  +  +   
Sbjct: 141 ADGKAAEYDVIVISGSLPVLPEAFGKQLKIGGRLLAIVGSLPVMELQLITRTSEHAFETV 200

Query: 290 TLEQCHFVPLR 300
            + +    PL 
Sbjct: 201 NVVETLAKPLH 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 845,412
Number of extensions: 33830
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)