BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0113.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312261|ref|YP_003776353.1| FtsH interacting integral membr...   429   e-122

>gi|300312261|ref|YP_003776353.1| FtsH interacting integral membrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  429 bits (1104), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/229 (94%), Positives = 224/229 (97%)

Query: 1   MNQLDTTFGHSTTSLATRNRVLRNTYWLLALSMIPTVLGAWLGVQMHFSLFAASPMIGFV 60
           MN LDTTFGHSTTSLATRNRVLRNTYWLLALSMIPTVLGAWLGVQ+HFSLFA SPMI FV
Sbjct: 1   MNNLDTTFGHSTTSLATRNRVLRNTYWLLALSMIPTVLGAWLGVQLHFSLFAGSPMISFV 60

Query: 61  LFLAIAFGFFYAIEKTKNTGWGVAFLLGFTFFMGLMLSRLIEYTLGFSNGAGLIMTAFGG 120
           LFLAIAFGFFYAIEKTKN+G GVAFLLGFTFFMGLMLSRLIE+TLGFSNGAGLIMTAFGG
Sbjct: 61  LFLAIAFGFFYAIEKTKNSGLGVAFLLGFTFFMGLMLSRLIEFTLGFSNGAGLIMTAFGG 120

Query: 121 TAIIFCGMATIATVSKRDFSGMGKWLFAGVLVILVASLANIFLHLPALQLTISVVAIAIF 180
           TAIIFCGMATIATVSKRDFSG+GKWLFAGVLVILVA+LANIFL LPALQLTIS+VAIAIF
Sbjct: 121 TAIIFCGMATIATVSKRDFSGLGKWLFAGVLVILVAALANIFLQLPALQLTISMVAIAIF 180

Query: 181 SAYILYDVQQVVNGGETNYISATLAIYLDVYNVFANLLSILGIVGGNRD 229
           SAYIL+DVQQVVNGGETNYISATLAIYLDVYNVFANLLSILGIVGGNRD
Sbjct: 181 SAYILFDVQQVVNGGETNYISATLAIYLDVYNVFANLLSILGIVGGNRD 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 649,900
Number of extensions: 24626
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)