BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0110.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312258|ref|YP_003776350.1| transmembrane protein [Herbaspi...   287   8e-79

>gi|300312258|ref|YP_003776350.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score =  287 bits (735), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 155/211 (73%), Positives = 170/211 (80%), Gaps = 19/211 (9%)

Query: 1   MNEMSSQ------QPQDPGPSSPAQVLPGAALAAARQKKGWTIEQAASLVKLAPRQIMAI 54
           MNE+ SQ      QP   GPS     LPGA LAA RQKKGW++EQ ASLVKLAPRQI AI
Sbjct: 6   MNEVPSQPSPEGAQPVQ-GPS-----LPGAMLAAQRQKKGWSVEQVASLVKLAPRQIQAI 59

Query: 55  EADNYAALPGLAVARGFVRSYAKVLGLDVHAVTASLPQESAVQQRDHIVPQHQLSTPFSE 114
           EADNYAALPGLAVARGFVRSYAKV+GLD +A+TA++PQES V QRDHIVPQH LSTPFSE
Sbjct: 60  EADNYAALPGLAVARGFVRSYAKVVGLDANALTAAMPQESDVAQRDHIVPQHSLSTPFSE 119

Query: 115 GPLPAMMMSTRGNSSALPIVAGVVVVALLAGAAAVRWTELGANVPQLAFLKSHHEEAAAA 174
           GPLPAMMMSTRGNSS LPI+AGVVVVALLAG AAVRW++LGANVPQLA+LKSH  E+AAA
Sbjct: 120 GPLPAMMMSTRGNSSPLPIIAGVVVVALLAGGAAVRWSDLGANVPQLAWLKSHKSESAAA 179

Query: 175 SGTSPDAQNVQSAETASSTETPVNARVETIT 205
                +A        A S+ETPVNARVETIT
Sbjct: 180 PELPANAD-------AGSSETPVNARVETIT 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.122    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 760,952
Number of extensions: 24600
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 131 (55.1 bits)