BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0092.p
         (482 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312243|ref|YP_003776335.1| exported extracellular alpha-he...   723   0.0  

>gi|300312243|ref|YP_003776335.1| exported extracellular
           alpha-helical protein [Herbaspirillum seropedicae SmR1]
          Length = 1938

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/379 (92%), Positives = 364/379 (96%)

Query: 38  TATALTAPAAHAANASVLSFSPQGEVQRIRQVRARFSESMVKFGDPKAASPFDADCAISG 97
           T + L    A AA+A+V SFSPQGEVQRIRQVRARFSESMVKFGDPKAASPFDADCA++G
Sbjct: 13  TMSLLPVKPAQAASATVQSFSPQGEVQRIRQVRARFSESMVKFGDPKAASPFDADCAVAG 72

Query: 98  TARWADDKNWVYDFERDLPPGTRCSFNLRADARSVAGNTVSGKTRFQFSTGGPAVSRVEP 157
           TARWADD+NWVYDFERDLPPGTRCSF LRA+A+SVAGN+V GKTRFQFSTGGPAVSRV+P
Sbjct: 73  TARWADDRNWVYDFERDLPPGTRCSFTLRAEAKSVAGNSVGGKTRFQFSTGGPAVSRVQP 132

Query: 158 YSGAQIAEDQAFILFQNGPATEATVRDHLYCEAEGINERIPTKAVGDADRKALLQQFAKG 217
           YSGAQIAEDQAFILFQNGPATE +VR HLYCEAEGINERIP KAVG+ADRKALLQQFAKG
Sbjct: 133 YSGAQIAEDQAFILFQNGPATEPSVRQHLYCEAEGINERIPAKAVGEADRKALLQQFAKG 192

Query: 218 SDPASVTIVQCQQRLPNEAHVKLVWDRGIAAANAPAIVTSKPQVFNFQVRSEFAASLSCQ 277
            DPASVTIVQCQQRLPNEAHVKLVWDRGIAAANAPA+VTS+PQVFNFQVRSEFAASLSCQ
Sbjct: 193 VDPASVTIVQCQQRLPNEAHVKLVWDRGIAAANAPAVVTSQPQVFNFQVRSEFAASLSCQ 252

Query: 278 RENANAACSPILPVTLSFSAPVPRKLAEQVVMNATTGKIKPTLEGDKDEAVRELRFKPPF 337
           RENANAACSPILPVTLSFSAPVPRKLAEQVVMNATTGKIKPTLEGDKDEAVRELRFKPPF
Sbjct: 253 RENANAACSPILPVTLSFSAPVPRKLAEQVVMNATTGKIKPTLEGDKDEAVRELRFKPPF 312

Query: 338 PEKSDFTISLPSGFKDEDGRSLANAGAFPLKSALADFPPLAKFPAAPFGIIELNADPTLP 397
           PEKSDFTISLPSGFKDEDGR+LANAGAFPLKSALADFPPLAKFPAAPFGIIELNADPTLP
Sbjct: 313 PEKSDFTISLPSGFKDEDGRTLANAGAFPLKSALADFPPLAKFPAAPFGIIELNADPTLP 372

Query: 398 VTLRRVEAGLLVRGKDGRA 416
           VTLRRVEAGL VRGKDGRA
Sbjct: 373 VTLRRVEAGLQVRGKDGRA 391


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,419,484
Number of extensions: 58775
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 393
Effective length of database: 1,198,455
Effective search space: 470992815
Effective search space used: 470992815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)