BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0090.p (1457 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312243|ref|YP_003776335.1| exported extracellular alpha-he... 2788 0.0 >gi|300312243|ref|YP_003776335.1| exported extracellular alpha-helical protein [Herbaspirillum seropedicae SmR1] Length = 1938 Score = 2788 bits (7227), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1373/1453 (94%), Positives = 1405/1453 (96%), Gaps = 13/1453 (0%) Query: 5 LVTNLSVHVKLGRANGAVWVTRLDDAKPVADAEIRVSNCDGTQLWQGKTNASGVAMMPVL 64 LVTNLSVHVKLGRANGAVWVTRLDDAKPVADAEIRVSNCDG Q+WQGKTNASGVAMMP L Sbjct: 499 LVTNLSVHVKLGRANGAVWVTRLDDAKPVADAEIRVSNCDGAQIWQGKTNASGVAMMPAL 558 Query: 65 EDACVNRGYSAENADKISGLFVSARKTDEKGRQDMAFALTSWNEGIESWRFNLPTDMDKS 124 EDAC NRGYS +NADKI+GLFVSARKTDEKGRQDMAFALTSWNEGIESWRFNLPTDMDKS Sbjct: 559 EDACANRGYSPDNADKINGLFVSARKTDEKGRQDMAFALTSWNEGIESWRFNLPTDMDKS 618 Query: 125 ATTRATTIFDRTLFRAGETVSMKHVIRTETMQGFGLMRKEDLPTRVRISHLGSGQQYQFA 184 AT RATT+FDRTLFRAGETVSMKHVIRTET+QGFGLMRKEDLPTRVRISHLGSGQQYQF Sbjct: 619 ATVRATTVFDRTLFRAGETVSMKHVIRTETLQGFGLMRKEDLPTRVRISHLGSGQQYQFP 678 Query: 185 LNWRGNKSAETSFTLPKEAKLGSYEVVLDQGTVDPAASSNANGQSDDGDNEAGYGRGTYV 244 L WRGNKSAET+F LPK+AKLGSYEVVLDQG VD AS+ QSDDGD E GYGRGTYV Sbjct: 679 LTWRGNKSAETTFVLPKQAKLGSYEVVLDQGKVDANASAEPTEQSDDGDYEGGYGRGTYV 738 Query: 245 TGSFRVEEFRLPLMQGRITPPKGAQVAIKELPLDLQLNYINGGAAANQAVQVSSLLRSRS 304 TGSFRVEEFRLPLMQGRITPPKGAQVA+KE+PLDLQLNYINGGAAANQAVQVSSLLRSRS Sbjct: 739 TGSFRVEEFRLPLMQGRITPPKGAQVAVKEMPLDLQLNYINGGAAANQAVQVSSLLRSRS 798 Query: 305 VNIAGYDGFSFDAPRNDEDSNADDQKIVADKLAVTLDKNGAGRAVIGKLPALQRPQELLT 364 +NIAGYDGFSFDAPR+D+DSNADDQKIVADKLA+TLDKNGAGRA I KLPALQRPQELLT Sbjct: 799 LNIAGYDGFSFDAPRSDDDSNADDQKIVADKLAITLDKNGAGRATISKLPALQRPQELLT 858 Query: 365 EMTYSDPNGEVQTISNVTPLWPSAVVVGLRTGNWVSVKKKLTLTAVTLNTAGQPQAGVPV 424 EMTYSDPNGEVQTISNVTPLWPSAVVVGLRTGNWVSVKKKLTLTAVTLNTAGQPQAGVPV Sbjct: 859 EMTYSDPNGEVQTISNVTPLWPSAVVVGLRTGNWVSVKKKLTLTAVTLNTAGQPQAGVPV 918 Query: 425 EIRGLARKTNSHRKRMVGGFYAYENDESKQDLGKLCSGKSDQHGMFTCDTELSEAGNVEL 484 EIRG+ARKTNSHRKRMVGGFYAYENDESKQDLGKLCSGKSDQHGMFTCDTELSEAGNVEL Sbjct: 919 EIRGIARKTNSHRKRMVGGFYAYENDESKQDLGKLCSGKSDQHGMFTCDTELSEAGNVEL 978 Query: 485 IASAKDGNGNAAAARSSVWVTGRGEVWFDGENQDRIDILPEKKNYQPGETANFQVRMPFR 544 IASAKDGNGNAAAARSSVWVTGRGEVWFDGENQDRIDILPEKKNYQPGETANFQVRMPFR Sbjct: 979 IASAKDGNGNAAAARSSVWVTGRGEVWFDGENQDRIDILPEKKNYQPGETANFQVRMPFR 1038 Query: 545 YATALVAVEREGVIDTRVVQLSGQDPTISVPMKAEYGPNVYVSVLAVRGRMREVPWYSFF 604 ATALVAVEREGVIDTRVVQLSGQDPTISVPMKAEYGPNVYVSVLAVRGRMREVPWYSFF Sbjct: 1039 SATALVAVEREGVIDTRVVQLSGQDPTISVPMKAEYGPNVYVSVLAVRGRMREVPWYSFF 1098 Query: 605 IWGWKEPINWWHEFREYQGPGPIVDLSKPAWKFGIAEVNVGDAGHRLQVAVSTDKPAYPI 664 IWGWKEPINWWHEFREYQGPGPIVDLSKPAWKFGIAEVNVGDAGHRLQVAVSTDKP YPI Sbjct: 1099 IWGWKEPINWWHEFREYQGPGPIVDLSKPAWKFGIAEVNVGDAGHRLQVAVSTDKPTYPI 1158 Query: 665 RATAKVQVQVKLPNGKPAAGGEFALAAVDEALLELQPNGSWDVLRAMLQRRSYGVETSTA 724 RA AKVQVQVKLPNGKPAAGGEFALAAVDEALLELQPNGSWDVL AMLQRRSYGVETSTA Sbjct: 1159 RAIAKVQVQVKLPNGKPAAGGEFALAAVDEALLELQPNGSWDVLHAMLQRRSYGVETSTA 1218 Query: 725 QMQVVGKRHYGKKATPAGGGGGRAPTRELFDTLLVWKPNVTLDADGRAQLDVPLNDALTS 784 QMQVVGKRHYGKKATPAGGGGGRAPTRELFDTLLVWKPNVTLDA+GRAQLDVPLNDALTS Sbjct: 1219 QMQVVGKRHYGKKATPAGGGGGRAPTRELFDTLLVWKPNVTLDAEGRAQLDVPLNDALTS 1278 Query: 785 FRIVAIAENGISDFGTGSISIRSTQDVQVISGLPPLVREGDNFNGSVTVRNTTTHDMTIK 844 FRIVAIAENGISDFGTGSISIRSTQDVQVISGLPPLVREGD+FNG+VTVRNTTTHDMTIK Sbjct: 1279 FRIVAIAENGISDFGTGSISIRSTQDVQVISGLPPLVREGDSFNGAVTVRNTTTHDMTIK 1338 Query: 845 VAARAQGGTTASTLTLPEREVKIAAGQSAEVMWPVQTPEGINQLAWEISAQEQAGQKARD 904 VAARAQGGT ASTLTLPEREVKIAAGQSAEVMWPVQTPEGINQLAWEISAQEQ GQKARD Sbjct: 1339 VAARAQGGTAASTLTLPEREVKIAAGQSAEVMWPVQTPEGINQLAWEISAQEQGGQKARD 1398 Query: 905 AMKFTQRVVPAVPVTVQQATLFPLDKSAAINVARPADSLPGRGGLALSLKPSLAGGSDAL 964 AMKFTQRVVPAVPVTVQQATLF LDK+AA++VARPADSLPGRGGLA+SLKPSLAGGSDAL Sbjct: 1399 AMKFTQRVVPAVPVTVQQATLFQLDKNAALDVARPADSLPGRGGLAISLKPSLAGGSDAL 1458 Query: 965 TRYFVNYPFACLEQKTSKAIGLRDEAAWQKIVADLPTYLDGDGLAYYFPPSDSGARRACD 1024 TRYFVNYPFACLEQKTSKAIGLRDEAAWQKIVADLPTYLDGDGLAYYFPPSDSG Sbjct: 1459 TRYFVNYPFACLEQKTSKAIGLRDEAAWQKIVADLPTYLDGDGLAYYFPPSDSG------ 1512 Query: 1025 LSPCESRARRGSDTLTAYLLAATNEAGYAIPQASRDKMLDGLAAFVEGKVMRDFWSPQKD 1084 ARRGSDTLTAYLLAATNEAGYAIPQASRDKMLDGLAAFVEGKVMRDFWSPQKD Sbjct: 1513 -------ARRGSDTLTAYLLAATNEAGYAIPQASRDKMLDGLAAFVEGKVMRDFWSPQKD 1565 Query: 1085 LDVRKLAALEALSRYNRVQPAMLGSIQINPNVWPTSGLLDWIGILQRVSVIPERDKKLEQ 1144 LDVRKLAALEALSRYNRVQPAMLGS+QINPNVWPTSGLLDWIGILQRV IP+R KKL++ Sbjct: 1566 LDVRKLAALEALSRYNRVQPAMLGSLQINPNVWPTSGLLDWIGILQRVPAIPDRQKKLDE 1625 Query: 1145 ADQILRARLNFQGTRMGFSNEEGDYWWWLMSSADANANRLILLELNNPAWREDMPRLIAG 1204 ADQILRARLNFQGTRMGFSNEEGDYWWWLMSS DANANRLILLELNNPAWREDMPRLIAG Sbjct: 1626 ADQILRARLNFQGTRMGFSNEEGDYWWWLMSSGDANANRLILLELNNPAWREDMPRLIAG 1685 Query: 1205 AIGRQQRGHWSTTTANVWGSLALEKFARKFESEPVTGTTRATLEQNGTSTATQSLAWSGA 1264 AIGRQQRGHWSTTTANVWGSLALEKFARKFESEPVTG TRATLEQNG S ATQSLAWSGA Sbjct: 1686 AIGRQQRGHWSTTTANVWGSLALEKFARKFESEPVTGATRATLEQNGASAATQSLAWSGA 1745 Query: 1265 ANGGKLQLPWPEGSAQGGSVRLTQEGNGKPWVTLQSLAAVPLKQPFAAGYRITRKVEAIE 1324 NGGKLQLPWPEG+AQGGSVRL QEGNGKPWVTLQSLAAVPLKQPFAAGYRITRKVEAIE Sbjct: 1746 PNGGKLQLPWPEGNAQGGSVRLAQEGNGKPWVTLQSLAAVPLKQPFAAGYRITRKVEAIE 1805 Query: 1325 QKQSGVYTRGDVLRVTLDIDAQAEMTWVVVSDPVPGGATLLGSGLGRDSAIAQGKQEAPR 1384 QKQ+GVYTRGDVLRVTLDIDAQAEMTWVVVSDPVPGGATLLGSGLGRDSAIAQGKQ+APR Sbjct: 1806 QKQAGVYTRGDVLRVTLDIDAQAEMTWVVVSDPVPGGATLLGSGLGRDSAIAQGKQDAPR 1865 Query: 1385 DRGMGWLAYEERSFEAYRAYYEAMPKGRTSISYTVRLNNAGEFNLPPTRVEAMYAPEMFG 1444 +RGMGWLAYEERSFEAYRAYYEAMPKGRTSISYTVRLNNAGEFN+PPTRVEAMYAPEMFG Sbjct: 1866 ERGMGWLAYEERSFEAYRAYYEAMPKGRTSISYTVRLNNAGEFNMPPTRVEAMYAPEMFG 1925 Query: 1445 EVPNGKLVVKASQ 1457 EVPNGKLVVKA+Q Sbjct: 1926 EVPNGKLVVKAAQ 1938 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.131 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 4,632,970 Number of extensions: 202044 Number of successful extensions: 549 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 548 Number of HSP's successfully gapped: 1 Length of query: 1457 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1360 Effective length of database: 1,160,575 Effective search space: 1578382000 Effective search space used: 1578382000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 137 (57.4 bits)