BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0087.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311047|ref|YP_003775139.1| arginase/agmatinase/formimionog...   452   e-128
gi|300309408|ref|YP_003773500.1| arginase/agmatinase/formimionog...    59   6e-10

>gi|300311047|ref|YP_003775139.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  452 bits (1162), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/303 (70%), Positives = 254/303 (83%)

Query: 1   MPRFAGRSTMMRLPAMDSAEGLDAAFIGVPLDIGTSLRAGTRFGPRQIRAESVMIRPYNM 60
           MPRF G +TMMRLP ++   GLD  F+GVPLDIGTS R+GTRFGPRQIR ESV++RPYNM
Sbjct: 14  MPRFGGIATMMRLPHVEDPAGLDVGFVGVPLDIGTSNRSGTRFGPRQIRTESVLLRPYNM 73

Query: 61  ATGAAPFDSLSVADIGDVAINTYNLLESVRVIEEAYEELMAYPVIPLTLGGDHTITLPIL 120
           AT AAPFDSL VAD+GDVA+N Y+LL+SVR+IEEAY+ + A     ++LGGDHT+TLPIL
Sbjct: 74  ATRAAPFDSLKVADLGDVALNPYSLLDSVRMIEEAYDRIYATGCKTISLGGDHTLTLPIL 133

Query: 121 RAIARKHGPVGLVHVDAHTDTNDDMFGEKIAHGTTFRRAVEEGLLDCKRVVQIGQRAQGY 180
           RA+AR  GPVGL+HVDAH D ND M GEKIAHGT FRRA EEGLLD +RVVQIG R  GY
Sbjct: 134 RALARYRGPVGLIHVDAHADVNDTMNGEKIAHGTPFRRAFEEGLLDPQRVVQIGLRGTGY 193

Query: 181 SSGDFQWGVDQGFRLVQAEQCWHRSLAPLMEEVRARIGAGPVYLSFDIDGIDPAWAPGTG 240
            + DF W   QGFR+VQAE+CWHRSLAPLMEEVRA++G GPVYL+FDIDG+DPA+APGTG
Sbjct: 194 HADDFDWCRAQGFRVVQAEECWHRSLAPLMEEVRAQMGDGPVYLTFDIDGLDPAFAPGTG 253

Query: 241 TPEVGGLTSIQALEIVRGCRGMNLVGCDLVEVSPPYDLSGNTSQLGANLLYEMLCVLPGV 300
           TPE+GGLT  Q LEI+RGC+G+++V  D+VEVSPPYD +G T+ + ANL YEMLC+LPGV
Sbjct: 254 TPEIGGLTVQQGLEIIRGCKGLDIVSADVVEVSPPYDQAGTTALVAANLAYEMLCILPGV 313

Query: 301 TYR 303
           TYR
Sbjct: 314 TYR 316


>gi|300309408|ref|YP_003773500.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 132/305 (43%), Gaps = 51/305 (16%)

Query: 26  FIGVPLDIGTSLRAGTRFGPRQIRAESVMIRPYNMATGAAPFDSLSVADIGDVA------ 79
            +G P D+G S R G    P  +R   +  R             L V D GD+A      
Sbjct: 6   MMGAPTDVGAS-RRGASMAPAALRVAELQ-RGLQQ-------HGLDVIDGGDLAGPANPQ 56

Query: 80  ---INTYNLLESV----RVIEEAYEELMAYPVIPLTLGGDHTITLPILRAIA---RKHGP 129
              +     LE V    + + EA  + +A   +PL +GGDH + +  + A+A   R  G 
Sbjct: 57  QPPVQGLRHLEQVVQWNQTVHEAVAQCLADGELPLLMGGDHALAVGSIAAVAAHCRSQGK 116

Query: 130 -VGLVHVDAHTDTND-------DMFGEKIAH----GTTFRRAV--EEGLLDCKRVVQIGQ 175
            + ++ +DAH D N        ++ G  +A     G     A+  +   L  +++ Q+G 
Sbjct: 117 ELRVLWLDAHADANTSQSTPTGNIHGMPVACLLGVGPAALTAIGGQTPALQPQQICQVGI 176

Query: 176 RAQGYSSGDFQWGVDQGFRLVQAEQCWHRSLAPLMEEVRARIGAGP---VYLSFDIDGID 232
           R+      + +   + G R+          +   MEE  A  G GP   +++SFD+D +D
Sbjct: 177 RS--VDREEKRHLRELGVRVFDMRHIDEYGMRQTMEEALA--GVGPQTHLHVSFDVDFLD 232

Query: 233 PAWAPGTGTPEVGGLTSIQA---LEIVRGCRGMNLVGCDLVEVSPPYDLSGNTSQLGANL 289
            A APG GT   GG T  +A   +E++       L   D++E++P  D+   T++L  +L
Sbjct: 233 AALAPGVGTAVPGGPTYREAQLCMEMIADTGA--LASLDVMELNPACDVRNQTAELVVDL 290

Query: 290 LYEML 294
           +  + 
Sbjct: 291 VESLF 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,019,206
Number of extensions: 45517
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)