BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0083.p (486 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 239 4e-64 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 229 3e-61 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 228 1e-60 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 226 2e-60 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 223 2e-59 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 239 bits (610), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 125/246 (50%), Positives = 175/246 (71%), Gaps = 12/246 (4%) Query: 238 LELIGIHKAYGAHEVLKGVNLSVRAGEVVSIIGPSGSGKTSLIRTINALEKIDQGEIILF 297 +E + K +G++ VL G+NL++R GEVV +IGPSGSGK++L+R INALE+ID G++++ Sbjct: 2 VEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLVD 61 Query: 298 GEGYISANASLESSLVRNGIGRIGMVFQGFNLFPHLSVLDNVLLAPRYHR-QPGEPALRQ 356 G +S ++S+ + +R GMVFQ FNLFP L+ L+NV PR+ R E A Sbjct: 62 GISVLSGSSSVRA--IRQ---EAGMVFQQFNLFPQLTALENVAFGPRHVRGASSEEA--N 114 Query: 357 TRALQLLDKVGLLAHQHKYPHQLSGGQQQRVAIARALAMSPDVMLFDEPTSALDPELVGE 416 A +LL KVGL +H YP++LSGGQQQRVAIARALA+ P +MLFDEPTSALDPEL E Sbjct: 115 ALASELLAKVGLAERKHHYPNELSGGQQQRVAIARALAVRPKLMLFDEPTSALDPELRQE 174 Query: 417 VLKVIQELAQEGMTMVIVTHEMDFALTISDRVLFMENGRVQLDASPRQIREATATDAATL 476 VL+V+Q LA+EGMTM++VTHE+ FA + R++FMENG + +D +P ++ E ++ Sbjct: 175 VLRVMQSLAEEGMTMIVVTHEISFARRVGTRLIFMENGHIAIDGNPGELIE----NSCNP 230 Query: 477 RVRRFM 482 R+R F+ Sbjct: 231 RLREFL 236 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 229 bits (585), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 128/249 (51%), Positives = 171/249 (68%), Gaps = 13/249 (5%) Query: 236 SALELIGIHKAYGAHEVLKGVNLSVRAGEVVSIIGPSGSGKTSLIRTINALEKIDQGEII 295 + +EL G+HK +G++ VL+GV+ V GEVV+IIG SGSGK++ +R IN LE+ID G+I Sbjct: 3 TVVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQIS 62 Query: 296 LFGEGYISANASLESSLVRNGIGRIGMVFQGFNLFPHLSVLDNVLLAPR-YHRQPGEPAL 354 + G +A L L R+ +G+VFQG+NLFPHL+VL N+ L P R P + A Sbjct: 63 VCGHALHAAGLDLRG-LRRD----VGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQA- 116 Query: 355 RQTRALQLLDKVGLLAHQHKYPHQLSGGQQQRVAIARALAMSPDVMLFDEPTSALDPELV 414 QT A Q+L +VGL YP QLSGGQQQRVAIAR+LA+ P +MLFDE TSALDPEL Sbjct: 117 -QTLAQQVLARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELT 175 Query: 415 GEVLKVIQELAQEGMTMVIVTHEMDFALTISDRVLFMENGRVQLDASPRQIREATATDAA 474 GEVLKV++++A EGMTM++VTHEM FA ++D+V+FM G+V P +I +A T Sbjct: 176 GEVLKVMEQMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGP-EILDAPVTP-- 232 Query: 475 TLRVRRFMG 483 +R F+G Sbjct: 233 --ELRSFVG 239 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 228 bits (580), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 118/219 (53%), Positives = 153/219 (69%), Gaps = 6/219 (2%) Query: 238 LELIGIHKAYGAHEVLKGVNLSVRAGEVVSIIGPSGSGKTSLIRTINALEKIDQGEIILF 297 +E+ I K +G HEVLK V+LSV GEVV +IGPSGSGK++++R IN LE ++G+I++ Sbjct: 2 IEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILID 61 Query: 298 GEGYISANASLESSLVRNGIGRIGMVFQGFNLFPHLSVLDNVLLAPRYHRQPGEPALRQT 357 G+ + + R+GMVFQ FNLFPH +VL+NV P Y R + Sbjct: 62 GQ-----RVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQAR-S 115 Query: 358 RALQLLDKVGLLAHQHKYPHQLSGGQQQRVAIARALAMSPDVMLFDEPTSALDPELVGEV 417 A+ LLDKVGL A YP QLSGGQQQRVAIAR+LAM P+ +LFDEPTSALDPELVGEV Sbjct: 116 EAMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEV 175 Query: 418 LKVIQELAQEGMTMVIVTHEMDFALTISDRVLFMENGRV 456 L V++ LA +GMTM++VTHEM FA ++DRV F+ +G + Sbjct: 176 LAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSI 214 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 226 bits (577), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 118/225 (52%), Positives = 162/225 (72%), Gaps = 10/225 (4%) Query: 243 IHKAYGAHEVLKGVNLSVRAGEVVSIIGPSGSGKTSLIRTINALEKIDQGEIILFGEGYI 302 + K +G +L+G++ +RA EVV +IGPSGSGK++ +R +N LE++ G+I F EG Sbjct: 7 LQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDI--FIEGVK 64 Query: 303 SANASLESSLVRNGIGRIGMVFQGFNLFPHLSVLDNVLLAPRYHRQPGEPALRQTR--AL 360 + + + +R +GMVFQ FNLFPH++VL+N+++AP Q + + R+ A Sbjct: 65 LNDPKVNLNALR---AELGMVFQRFNLFPHMTVLENLIMAPM---QVKKLSRREAVLVAE 118 Query: 361 QLLDKVGLLAHQHKYPHQLSGGQQQRVAIARALAMSPDVMLFDEPTSALDPELVGEVLKV 420 +LL KVGLL +P+QLSGGQQQRVAIARALAM P VMLFDEPTSALDPELVGEVL V Sbjct: 119 KLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTV 178 Query: 421 IQELAQEGMTMVIVTHEMDFALTISDRVLFMENGRVQLDASPRQI 465 +++LA+EGMTMV+VTHEM FA +SDRVLF++ G + + P+Q+ Sbjct: 179 MKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQV 223 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 223 bits (569), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 123/249 (49%), Positives = 170/249 (68%), Gaps = 10/249 (4%) Query: 238 LELIGIHKAYGAHEVLKGVNLSVRAGEVVSIIGPSGSGKTSLIRTINALEKIDQGEIILF 297 +E+ I K +G+++VL G++LSV G+VV+IIG SGSGK++++R IN LE ID G I + Sbjct: 4 VEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITVA 63 Query: 298 GEGYISANASLESSLVRNGIGRIGMVFQGFNLFPHLSVLDNVLLAPRYHRQPGEPALRQT 357 G + L L ++ +GMVFQ +NLFPHL+V +N++L+PR ++ R+T Sbjct: 64 GHKLTHKHEHL-IELRKD----VGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARET 118 Query: 358 RALQLLDKVGLLAHQHKYPHQLSGGQQQRVAIARALAMSPDVMLFDEPTSALDPELVGEV 417 A+++L +VGL + YP QLSGGQQQRVAIAR+LAM P VMLFDE TSALDPEL EV Sbjct: 119 -AIKVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEV 177 Query: 418 LKVIQELAQEGMTMVIVTHEMDFALTISDRVLFMENGRVQLDASPRQIREATATDAATLR 477 LKV++ELA+ GMTM++VTHEM+FA ++D +FM G+V +A P E D T Sbjct: 178 LKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKV-WEARP---SEEFFADPQTPE 233 Query: 478 VRRFMGLDA 486 R+F+G A Sbjct: 234 ARQFIGAGA 242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,393,632 Number of extensions: 55441 Number of successful extensions: 813 Number of sequences better than 1.0e-08: 152 Number of HSP's gapped: 515 Number of HSP's successfully gapped: 168 Length of query: 486 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 397 Effective length of database: 1,198,455 Effective search space: 475786635 Effective search space used: 475786635 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 132 (55.5 bits)