BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0070.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312231|ref|YP_003776323.1| dienelactone hydrolase [Herbasp...   119   3e-28
gi|300312410|ref|YP_003776502.1| dienelactone hydrolase [Herbasp...    90   2e-19

>gi|300312231|ref|YP_003776323.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  119 bits (298), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/98 (72%), Positives = 78/98 (79%)

Query: 1   MRHWGKPLAAFCIAASLAVIGSWAQAAPNSAPPPPLEARRVSLTSVDSKGGKATALYGVW 60
           MR WG PLA FC AA +    +   AAPNSAPP PLEARRV+LTSVD  GGKAT+LYGVW
Sbjct: 29  MRIWGTPLATFCAAAFMLAASALTHAAPNSAPPAPLEARRVALTSVDGNGGKATSLYGVW 88

Query: 61  IKARKSLTTKGPAPTVIALHGCGGLYSMVKDGKGEFTP 98
           IKARKSL +KGP PTVIALHGCGGLYS+VKDG+G   P
Sbjct: 89  IKARKSLNSKGPYPTVIALHGCGGLYSIVKDGRGGIHP 126


>gi|300312410|ref|YP_003776502.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 98/221 (44%), Gaps = 23/221 (10%)

Query: 71  GPAPTVIALHGCGGLYSMVKDGK--------------GEFTPRHLAMARVLSDAGYNVLF 116
           GP P V+ LHG  G YS   +G                  + RH A A    + GY  L 
Sbjct: 95  GPHPAVVMLHGRAGPYSSRINGDCTRIGPALPSPCDASTLSQRHQAWAAYWIERGYLALL 154

Query: 117 PDSFTPRG-RRSTCQDTVAQREVSAMN----RRYDVQAALHWVTSQPDVDVKRIALLGWS 171
            DS+ PRG      + T    E + +N    R  D + AL W+  + DV+  RI L GWS
Sbjct: 155 VDSYGPRGVAHGFGRHTHGAPERAEVNELTVRPLDAEGALAWLAPRSDVNPARILLQGWS 214

Query: 172 HGASTLLASINLAETDVAVRKIQPRAAVAFYPDCRPYAKTTEPFKPAAPLLILMGENDDW 231
           +GAST L  +    + +         A+ FYP C P A  +   +   P+ +L+G  D  
Sbjct: 215 NGASTALNVMQRQASRLGGTAPSFAGAMVFYPGCGPQALLSSSPELDRPVQVLLGAADQE 274

Query: 232 TPPQACEAIEEK---MKGSDTEIALRLYPDTYHDFDAPGLP 269
             PQ C  +  +   M+ + + + + LYP   HDFD PG P
Sbjct: 275 VSPQRCLRVLRQAIPMRRNSSPV-VTLYPGATHDFDDPGRP 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,000,178
Number of extensions: 41129
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)