BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0069.p
         (973 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312230|ref|YP_003776322.1| phosphoenolpyruvate carboxylase...  1752   0.0  

>gi|300312230|ref|YP_003776322.1| phosphoenolpyruvate carboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 970

 Score = 1752 bits (4538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 888/973 (91%), Positives = 931/973 (95%), Gaps = 5/973 (0%)

Query: 3   MATKNPTPRSARSTPSTPRATTAAKRSPASKTVT--KPARSTDKDAPLKEDIRLLGRLLG 60
           MAT NPT RSARS PST R+  A   +PA+ ++T  KPAR  DKDAPLKEDIRLLGRLLG
Sbjct: 1   MATTNPTKRSARSAPSTSRSAGA---NPAATSITPSKPARGADKDAPLKEDIRLLGRLLG 57

Query: 61  EVVREQEGDEVFEVVETIRQTAVRFRRESDAKAGAELDKLLKKLTRDQTNSVVRAFSYFS 120
           EV+REQEGDEVFEVVETIRQTAVRFRRESDAKAGAELDKLLKKLTRDQTNSVVRAFSYFS
Sbjct: 58  EVLREQEGDEVFEVVETIRQTAVRFRRESDAKAGAELDKLLKKLTRDQTNSVVRAFSYFS 117

Query: 121 HLANIAEDQHHNRRRRAHLLAGSEAQPGSVAYALSRLDDAGVSGAQVRSFLKEALVSPVL 180
           HLANIAEDQHHNRRRRAHLLAGSEAQPGSVAYALSRLDDAGVSGAQVR+FLKEALVSPVL
Sbjct: 118 HLANIAEDQHHNRRRRAHLLAGSEAQPGSVAYALSRLDDAGVSGAQVRNFLKEALVSPVL 177

Query: 181 TAHPTEVQRKSILDAEREIARLVAERDLPLTPRELRHNTELLRARIATLWQTRMLRYTKL 240
           TAHPTEVQRKSILDAEREIARLVAERDLPLTPRELRHNTELLRARIATLWQTRMLRYTKL
Sbjct: 178 TAHPTEVQRKSILDAEREIARLVAERDLPLTPRELRHNTELLRARIATLWQTRMLRYTKL 237

Query: 241 TVADEIENALSYYRITFLRELPALYDDIEAEIDSQFPSRAKTRAVELPPYLQMGSWIGGD 300
           TVADEIENALSYYR TFLRELPALY+DIEAEIDSQFP+R K+R  ELPPY+QMGSWIGGD
Sbjct: 238 TVADEIENALSYYRTTFLRELPALYEDIEAEIDSQFPARGKSRPTELPPYVQMGSWIGGD 297

Query: 301 RDGNPNVNAATMQHALKRQSTTIFDYYLDEVHTLGAEMSISTLMVAASPELLALADASPD 360
           RDGNPNVNA TMQHAL+RQST +FDYYL+EVHTLGAE+SISTLMV ASPELLALA  SPD
Sbjct: 298 RDGNPNVNAGTMQHALQRQSTVVFDYYLEEVHTLGAELSISTLMVDASPELLALAATSPD 357

Query: 361 HSEHRADEPYRRALIGIYARLAATARSLGVVNILRQEIGAAAAYASPAECVAELEVLVAS 420
           HSEHRADEPYRRALIGIYARLAATAR+LG +NILRQE+GAAA Y +P +CVAEL+VLV+S
Sbjct: 358 HSEHRADEPYRRALIGIYARLAATARALGAINILRQEVGAAAPYETPEQCVAELDVLVSS 417

Query: 421 LQAHHGAALVKPRLAGLKRAVEIFGFHLATLDMRQSSDVHERVLAELFAKSQVEADYAGL 480
           LQAHHGAALVKPRLAGLKRAVEIFGFHLATLDMRQSSD+HERVLA+LFAK+QVEADYA L
Sbjct: 418 LQAHHGAALVKPRLAGLKRAVEIFGFHLATLDMRQSSDIHERVLADLFAKAQVEADYAAL 477

Query: 481 TEERKIALLLGELSKPRLLYSPYLQYADETNSELTILRAAREIRRRYGERAIRNYIISHT 540
            EERKIALLLGELS+PRLL+SPYL+Y+++T+SEL+ILRAAREIRRRYGERAIRNYIISHT
Sbjct: 478 NEERKIALLLGELSRPRLLHSPYLEYSEQTDSELSILRAAREIRRRYGERAIRNYIISHT 537

Query: 541 ETLSDLLEVLLLQKETGLLHIEGNQLHELELMVIPLFETIPDLRCAAEIMRGWLTLPQVK 600
           ETLSDLLEVLLLQKETGLLHIEGNQL ELELMVIPLFETIPDLRCAAEIMRGWL+LPQVK
Sbjct: 538 ETLSDLLEVLLLQKETGLLHIEGNQLRELELMVIPLFETIPDLRCAAEIMRGWLSLPQVK 597

Query: 601 GLIAKHGKLQEVMLGYSDSNKDGGFLTSNWELYKAENQLVELFNEAGVKLRLFHGRGGTV 660
           GLIAKHGKLQEVMLGYSDSNKDGGFLTSNWELYKAENQLVELFNEAGVKLRLFHGRGGTV
Sbjct: 598 GLIAKHGKLQEVMLGYSDSNKDGGFLTSNWELYKAENQLVELFNEAGVKLRLFHGRGGTV 657

Query: 661 GRGGGPSYQAILAQPPGTVNGQIRLTEQGEIIASKFSNPEIGRRNLELLVAATLEASLMP 720
           GRGGGPSYQAILAQPPGTVNGQIRLTEQGEIIASKF+NPEIGRRNLELLVAATLEASLMP
Sbjct: 658 GRGGGPSYQAILAQPPGTVNGQIRLTEQGEIIASKFANPEIGRRNLELLVAATLEASLMP 717

Query: 721 AATDGKEARKLAEFERVMEELSERAYRAYRNLVYETPGFTDYFFAATPIAEIAQLNIGSR 780
              D KEARKLAEFERVMEELSERAYRAYRNLVYETPGFTDYFFAATPIAEIAQLNIGSR
Sbjct: 718 TNADDKEARKLAEFERVMEELSERAYRAYRNLVYETPGFTDYFFAATPIAEIAQLNIGSR 777

Query: 781 PASRKATQRIEDLRAIPWGFSWGQCRLLLPGWYGFGSAVAGWLEEAGNAKESAKRLATLR 840
           PASRKATQRIEDLRAIPWGFSWGQCRLL PGWYGFGSAV+GWLE+AGNAKE+A+RLATLR
Sbjct: 778 PASRKATQRIEDLRAIPWGFSWGQCRLLFPGWYGFGSAVSGWLEDAGNAKEAARRLATLR 837

Query: 841 AMCKEWPFFAALLSNMDMVLSKTDLAVASRYAGLVADRKLRTTIFGRITGEHERTSSVLS 900
           AMCKEWPFFAALLSNMDMVLSKTDLAVASRYAGLVADRKLR  IFGRIT EHERTS++LS
Sbjct: 838 AMCKEWPFFAALLSNMDMVLSKTDLAVASRYAGLVADRKLRNAIFGRITDEHERTSAMLS 897

Query: 901 AITGTKERLSGNPLLARSIKNRFAYLDPLNHLQVELIKRHRATAAAKRAPEERVQRGIHL 960
            ITG+KERL+ NPLLARSIKNRFAYLDPLNHLQVELIKRHRAT AAKR PEERVQRGIHL
Sbjct: 898 TITGSKERLAANPLLARSIKNRFAYLDPLNHLQVELIKRHRATVAAKRTPEERVQRGIHL 957

Query: 961 TINGVAAGLRNTG 973
           TINGVAAGLRNTG
Sbjct: 958 TINGVAAGLRNTG 970


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,637,167
Number of extensions: 104158
Number of successful extensions: 349
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 1
Length of query: 973
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 879
Effective length of database: 1,174,780
Effective search space: 1032631620
Effective search space used: 1032631620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)