BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0065.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312228|ref|YP_003776320.1| uroporphyrinogen-III synthase [...   353   7e-99

>gi|300312228|ref|YP_003776320.1| uroporphyrinogen-III synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score =  353 bits (906), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 196/248 (79%), Positives = 209/248 (84%), Gaps = 3/248 (1%)

Query: 1   LPVVVTRPLQQAGGFAERVQQLGRRAVVFPLLAIGPVEDDSELKATLARLHDFALVVFVS 60
           LPVVVTRP QQA  FA  VQ LGR AVVFPLL I  VED + L+A LARL +FALVVFVS
Sbjct: 11  LPVVVTRPRQQAHAFAASVQALGRPAVVFPLLEISAVEDVATLQAMLARLEEFALVVFVS 70

Query: 61  PNAIDAAFAHLQG---WPRNVPIGIVGEGSRVALRGHGVDGANATIYGPQRADKMDSEEL 117
           PNAIDAAFA L     WP  V IGIVGEGSR+ALR HGVD A AT+YGPQRADKMDSEEL
Sbjct: 71  PNAIDAAFAQLPAGRPWPAKVAIGIVGEGSRLALRAHGVDAACATLYGPQRADKMDSEEL 130

Query: 118 FKSLPLEQLRGRRALIVRGQAGRDFLSEALQQQGVEIEFLTAYRRLAPELNPQSRLQLLD 177
            KSLPL QLRG+RALIVRGQ+GRDFLSEALQQQGV +E+LTAYRR AP L+ Q+   LLD
Sbjct: 131 LKSLPLAQLRGQRALIVRGQSGRDFLSEALQQQGVTVEYLTAYRRTAPRLDAQNGPLLLD 190

Query: 178 LLDGGADWVITSSEALRNLLHLARLAGGEERVVKLQRQRIVVSHHRIAETAREQGFVQVV 237
           LLDGGADWVITSSEALRNL+ L RLAGGEERVVKLQRQRI VSHHRIAETAREQGF +VV
Sbjct: 191 LLDGGADWVITSSEALRNLVDLTRLAGGEERVVKLQRQRIFVSHHRIAETAREQGFERVV 250

Query: 238 LTGSGDER 245
           LTGSGDER
Sbjct: 251 LTGSGDER 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 751,912
Number of extensions: 29572
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)