BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0064.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312227|ref|YP_003776319.1| uroporphyrin-III C-methyltransf...   667   0.0  

>gi|300312227|ref|YP_003776319.1| uroporphyrin-III
           C-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 401

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/401 (89%), Positives = 373/401 (93%), Gaps = 1/401 (0%)

Query: 1   MNEQQPTPQLPEPQPQASHSAGAAAPQASYTFTPPDGTAVLRRRQRAQTIVLLLVIAGLG 60
           M EQQ TPQLPEPQPQAS +AGAAA QASYTFT PDGTA LRRRQRAQT++LLLVIAGLG
Sbjct: 1   MTEQQSTPQLPEPQPQASQTAGAAASQASYTFTAPDGTAALRRRQRAQTVLLLLVIAGLG 60

Query: 61  AQWWVSHAELRDLRSEVAQRLQNGDNSSNELKGVLKAVQESTKELQSKVSVLDSKQAESQ 120
           AQWWVSHAELRDLRSEVAQRLQ+GDNS+NELKGVLKAVQESTKELQS+VSVLDSKQAESQ
Sbjct: 61  AQWWVSHAELRDLRSEVAQRLQSGDNSNNELKGVLKAVQESTKELQSRVSVLDSKQAESQ 120

Query: 121 SQQLALEQMYQDLNKNRDDWALSEIEEVLSTADQQLELAGNVQGALIALQNADKSLSRSD 180
           SQQLALEQMYQDLNKNRDDWALSEIEEVLSTADQQLELAGNVQGALIALQNADKSLSRSD
Sbjct: 121 SQQLALEQMYQDLNKNRDDWALSEIEEVLSTADQQLELAGNVQGALIALQNADKSLSRSD 180

Query: 181 KAQFIAIRRAIARDIERLKALPTVDIAGIAVRLDSAIGQVDNLPLLVDERPVESASEPKP 240
           K QFIAIRRA+ARDI+RLKALPTVDI GIAVRLDSAIGQ+DN+PLLVDE+PVESASEPKP
Sbjct: 181 KPQFIAIRRALARDIDRLKALPTVDIPGIAVRLDSAIGQIDNMPLLVDEKPVESASEPKP 240

Query: 241 QPVKTAAAEKPAAKGDAAHAKTKAEAAPAEASAWSQWLAGARETWRSMSTEMWSELRQLV 300
           Q V  A A K A+   A      A    A ASAWSQWLAGARETW+SMSTEMW+ELRQLV
Sbjct: 241 QRVSPAVAGK-ASAAPAKSKAAAAVPEEAPASAWSQWLAGARETWQSMSTEMWAELRQLV 299

Query: 301 RIREVQTPEAILLSPGQAYFVRENLKLRLLNARLALLSRNEFAFRNDLASAQDTIAKYFD 360
           RIREVQTPEAILLSPGQAYFVRENLKLRLLNARLALLSRNEFAFRNDLASAQDTIAKYFD
Sbjct: 300 RIREVQTPEAILLSPGQAYFVRENLKLRLLNARLALLSRNEFAFRNDLASAQDTIAKYFD 359

Query: 361 TRAKQVQTTQALLKQVQGSNVSIQLPTLAESLNAVRNYKAR 401
           TRAKQVQTTQALLKQVQGSN++IQLPTLAESLNAVRNYKAR
Sbjct: 360 TRAKQVQTTQALLKQVQGSNLAIQLPTLAESLNAVRNYKAR 400


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.125    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 896,386
Number of extensions: 28763
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)