BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0058.p
         (90 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918...   131   1e-32

>gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918
          [Herbaspirillum seropedicae SmR1]
          Length = 511

 Score =  131 bits (329), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/78 (85%), Positives = 73/78 (93%), Gaps = 1/78 (1%)

Query: 1  VNKTSLAWATCLVFSLVSGLPVQAQTAYAPPPAPVYTQQQLDQMLAPVALYPDSLLAQVL 60
          +NK++LAWA CLVFSLVSG+P QAQ+AY P PA VYTQQQLDQMLAPVALYPDSLLAQVL
Sbjct: 1  MNKSTLAWAACLVFSLVSGMPAQAQSAYPPAPA-VYTQQQLDQMLAPVALYPDSLLAQVL 59

Query: 61 MASTYPLEVVQAQRFVEA 78
          MASTYPLEVVQAQRF+EA
Sbjct: 60 MASTYPLEVVQAQRFIEA 77


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 173,646
Number of extensions: 3284
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 2
Length of query: 90
Length of database: 1,619,870
Length adjustment: 60
Effective length of query: 30
Effective length of database: 1,335,770
Effective search space: 40073100
Effective search space used: 40073100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)