BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0055.p (538 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis tra... 588 e-169 gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis tra... 531 e-152 gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 453 e-128 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 376 e-105 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 376 e-105 >gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 588 bits (1516), Expect = e-169, Method: Compositional matrix adjust. Identities = 330/532 (62%), Positives = 400/532 (75%), Gaps = 2/532 (0%) Query: 1 MTIAKKLYLLIIAVIAGLCALAALSIYQSYRVSAAAGYSTHNTVPSILALDEAIESVYAI 60 MTIA+KLYLLI+AV+ G+ A + +YQS+R++++AGYS +T+PS+LAL+ A +++Y I Sbjct: 31 MTIARKLYLLIVAVVLGVIMQAVVGLYQSHRIASSAGYSATDTIPSVLALNGATDAIYGI 90 Query: 61 RLNVARYFIEPTTRDKIFPVIEALHDKVQAAFLKFEKECISDATDAKMLEQDRAAFADYE 120 RLN+ARY IEPT R+K + ALH K Q F +FE+ CISD TD +MLE DR FA+YE Sbjct: 91 RLNIARYVIEPTAREKTVANMAALHQKAQDFFDQFERCCISDDTDRRMLEADRRFFAEYE 150 Query: 121 KARQQTLAFVDAGQANELQRAREELLVPAGNRLMKALIEHKQYNAQLGREGMENAASILE 180 K R + AG+ + L+ A EE + P G RLM L EHK YN QLGR+G E A L+ Sbjct: 151 KHRMAMVDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAADEHLQ 210 Query: 181 SSIVIIVGVSLLIGTLVVGLSLLLVRMIATSLRHATHVADAISRYDLTSKIEHAARDEIG 240 SI + + + L+ +V LSLLLVR I SL AT +AD I R DL+S+I RDE+ Sbjct: 211 LSIYLTIAAATLVIVMVSALSLLLVRNIRHSLHAATELADTIGRGDLSSQIVLRGRDEVT 270 Query: 241 HLMQALGRMNDSLRKVMGGVGDSTGTIQVAAREIATGNLDLSSRTESQAGSLEETATAME 300 LM +L RM SL +++G V DS TI+ A REIA+GNLDLSSRTE+QAGSLEET +AM Sbjct: 271 QLMLSLQRMTGSLVQILGKVNDSAATIETATREIASGNLDLSSRTEAQAGSLEETVSAMG 330 Query: 301 QLTATVRQNAENARQASELAISASAVAAQGGKVVDEVVLTMEAINASSLKIVDIISVIDG 360 QLT TV+QNA+NARQA ELA SAS VA Q GKVVDEV+LTMEAINASSLKIVDIISVIDG Sbjct: 331 QLTTTVKQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIISVIDG 390 Query: 361 IAFQTNILALNAAVEAX-AGEQGRGFAVVASEVRSLAQRSATAAKEIKELIQDSVDKIGA 419 IAFQTNILALNAAVEA AGEQGRGFAVVASEVRSLAQRSA+AA+EIKELI DSV+K+ + Sbjct: 391 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVNKVQS 450 Query: 420 GGRLVTEAGSTMAQVVTSVGRVTDIVSEISAASTEQSQGLEQINQAIGAMDEVTQQNAAL 479 G RLV +AGSTM +VVTSV RV+ IV +IS AS EQS G+ Q+NQAIG MD+ TQQNAAL Sbjct: 451 GSRLVLQAGSTMEEVVTSVRRVSGIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAAL 510 Query: 480 VEQAAAASQSLQEQAVQLAGAVQVFKLDRERELAIDLVSGETIPERAADLLL 531 VE+AAAASQSL+EQA LA AV VF+L+R E A S E + E+ A L L Sbjct: 511 VEEAAAASQSLREQAKGLAQAVSVFRLERSAE-APQPESTEPVQEQPAMLAL 561 >gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 531 bits (1369), Expect = e-152, Method: Compositional matrix adjust. Identities = 310/511 (60%), Positives = 390/511 (76%), Gaps = 3/511 (0%) Query: 1 MTIAKKLYLLIIAVIAGLCALAALSIYQSYRVSAAAGYSTHNTVPSILALDEAIESVYAI 60 MTIAKKL+LL +AVI GL +L+ L IYQS V+ AA YS+ NTVPS+LAL +A E+ + I Sbjct: 1 MTIAKKLHLLTLAVILGLASLSLLGIYQSREVAKAASYSSVNTVPSLLALGDAGEAAFGI 60 Query: 61 RLNVARYF--IEPTTRDKIFPVIEALHDKVQAAFLKFEKECISDATDAKMLEQDRAAFAD 118 R+ + +Y +P +R ++ + HD+V AAF ++ +E ISD TD K+LE DR AFAD Sbjct: 61 RVGIWKYAAATDPVSRTRLEKAMAEQHDRVLAAFDRYAREDISDDTDRKLLEADRQAFAD 120 Query: 119 YEKARQQTLAFVDAGQANELQRAREELLVPAGNRLMKALIEHKQYNAQLGREGMENAASI 178 YEK R L + E RA E+L+VP G++L+ AL EH++Y QLGR+G+E A I Sbjct: 121 YEKQRAVVLRIGAESRNEEALRAIEQLVVPPGDKLIAALAEHRKYKEQLGRQGVETAEGI 180 Query: 179 LESSIVIIVGVSLLIGTLVVGLSLLLVRMIATSLRHATHVADAISRYDLTSKIEHAARDE 238 L+SS + VSLL+ +V SLL+ R I+ SL A VA+AI+ DL+SK++ +DE Sbjct: 181 LQSSTYQAILVSLLVAAIVGATSLLISRGISVSLDDAIRVANAIAHGDLSSKVKMTGKDE 240 Query: 239 IGHLMQALGRMNDSLRKVMGGVGDSTGTIQVAAREIATGNLDLSSRTESQAGSLEETATA 298 +G L+ A+G M SL ++G V S I+ A+ EIA+GNLDLS+RTE+QAGS+EETA+A Sbjct: 241 VGQLLHAIGEMTASLVNIVGNVRQSVAAIESASSEIASGNLDLSARTEAQAGSIEETASA 300 Query: 299 MEQLTATVRQNAENARQASELAISASAVAAQGGKVVDEVVLTMEAINASSLKIVDIISVI 358 MEQLTATV+QNA+NA QA LA SAS+VA++GGKVV EVV TM+AIN+SSLKIVDIISVI Sbjct: 301 MEQLTATVKQNADNAHQADTLASSASSVASEGGKVVQEVVHTMDAINSSSLKIVDIISVI 360 Query: 359 DGIAFQTNILALNAAVEAX-AGEQGRGFAVVASEVRSLAQRSATAAKEIKELIQDSVDKI 417 DGIAFQTNILALNAAVEA AGEQGRGFAVVASEVRSLAQRSA+AA+EIKELI DSV+K+ Sbjct: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVEKV 420 Query: 418 GAGGRLVTEAGSTMAQVVTSVGRVTDIVSEISAASTEQSQGLEQINQAIGAMDEVTQQNA 477 +G RLV +AG+TM QVVTSV RV+DIV +IS AS EQS G+ Q+NQAIG MD+ TQQNA Sbjct: 421 QSGSRLVMQAGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNA 480 Query: 478 ALVEQAAAASQSLQEQAVQLAGAVQVFKLDR 508 ALVE+AAAASQSL+EQA LA AV VF+L+R Sbjct: 481 ALVEEAAAASQSLREQAKGLAQAVSVFRLER 511 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 453 bits (1165), Expect = e-128, Method: Compositional matrix adjust. Identities = 266/539 (49%), Positives = 362/539 (67%), Gaps = 13/539 (2%) Query: 1 MTIAKKLYLLIIAVIAGLCALAALSIYQSYRVSAAAGYSTHNTVPSILALDEAIESVYAI 60 ++I +LY+LI AVI G LA ++ + R A A +++ N VPS+L+L + + + Sbjct: 3 LSIVNRLYILIGAVIIGCVVLAGANMVKMNRTYADASFASENVVPSLLSLSTITQGINGM 62 Query: 61 RLNVARYF--IEPTTRDKIFPVIEALHDKVQAAFLKFEKECISDATDAKMLEQDRAAFAD 118 R+ RY E R I + +V+ A K+E+E ++DATD ++L R ++ + Sbjct: 63 RIATWRYLALTESVDRGAIESSFNSAKKRVEDALQKYEQEQLADATDKELLRAVRVSYQE 122 Query: 119 YEKARQQTLAFVDAGQANELQRAREELLVPAGNRLMKALIEHKQYNAQLGREGMENAASI 178 ++K+ + L +AGQ NE RA P +RL KA+ E + YN ++ + G A Sbjct: 123 FDKSLAEALKLANAGQWNE-ARALLANNQPVIDRLNKAMTELRAYNEKISQAGAHRAQET 181 Query: 179 LESSIVIIVGVSLLIGTLVVGLSLLLVRMIATSLRHATHVADAISRYDLTSKIEHAARDE 238 + ++ + + +S + +V + LL+ R IA SL A +A+ I+ DLT +I+ ++ DE Sbjct: 182 MAAARLHAILISAAVIAVVTLMGLLIARKIARSLAEAVELAETIAEGDLTREIDTSSTDE 241 Query: 239 IGHLMQALGRMNDSLRKVMGGVGDSTGTIQVAAREIATGNLDLSSRTESQAGSLEETATA 298 IGHLM A+ +MN +L ++ V T+ A+ +IATGN+DLS+RTE QA SLE+TA A Sbjct: 242 IGHLMAAMAKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAAA 301 Query: 299 MEQLTATVRQNAENARQASELAISASAVAAQGGKVVDEVVLTMEAINASSLKIVDIISVI 358 E+LT+TV+QNAENA QA +LA +AS +AA+GG+VV +VV TME I +SSL I DIISVI Sbjct: 302 TEELTSTVKQNAENALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISVI 361 Query: 359 DGIAFQTNILALNAAVEAX-AGEQGRGFAVVASEVRSLAQRSATAAKEIKELIQDSVDKI 417 DGIAFQTNILALNAAVEA AGEQGRGFAVVA+EVRSLAQRSA+AAKEIK+LI DSV K+ Sbjct: 362 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSVSKV 421 Query: 418 GAGGRLVTEAGSTMAQVVTSVGRVTDIVSEISAASTEQSQGLEQINQAIGAMDEVTQQNA 477 G +LV AG+TM QVV SV RVTD+V+EISAAS EQS G+EQ+NQAI MD+ TQ+NA Sbjct: 422 ENGSQLVMSAGNTMQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQENA 481 Query: 478 ALVEQAAAASQSLQEQAVQLAGAVQVFKLDRERELAIDLVSGE------TIPERAADLL 530 ALVE+A AA+QSLQEQA QL AV VFKL R+ A+D++ E T+P R LL Sbjct: 482 ALVEEATAAAQSLQEQARQLERAVNVFKL---RQEAMDILEMEDHRVTQTLPGRELSLL 537 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 376 bits (966), Expect = e-105, Method: Compositional matrix adjust. Identities = 255/515 (49%), Positives = 343/515 (66%), Gaps = 12/515 (2%) Query: 1 MTIAKKLYLLIIAVIAGLCALAALSIYQSYRVSAAAGYSTHNTVPSILALDEAIESVYAI 60 + IAKKL + AVI L +I + V+ A+ N +P+I A S+ + Sbjct: 7 LKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQASLPRM 66 Query: 61 RLNVARYFI--EPTTRDKIFPVIEALHDKVQAAFLKFEKECISDATDAKMLEQDRAAFAD 118 R++ + P R+ I++ D + +E + IS+A + + E+ +FA Sbjct: 67 RISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQ-ISEAEEKVLYEKFSKSFAT 125 Query: 119 YEKARQQTLAFVDAGQANELQRAREELLVPAGNRLMKALIEHK----QYNAQLGREGMEN 174 Y + ++ LA + A E RA L N+ +++IE+ + N + + Sbjct: 126 YLEIDKE-LARISAEGKEEEARA---LFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDDM 181 Query: 175 AASILESSIVIIVGVSLLIGTLVVGLSLLLVRMIATSLRHATHVADAISRYDLTSKIEHA 234 A + S+ + I+G+ I + +GL++++ R ++ L A VA+ +++ DLT I Sbjct: 182 AEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRAT 241 Query: 235 ARDEIGHLMQALGRMNDSLRKVMGGVGDSTGTIQVAAREIATGNLDLSSRTESQAGSLEE 294 + DE G LM +L MNDSL++++G V T TI A++EIATGNLDLSSRTE QAGSLEE Sbjct: 242 STDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLEE 301 Query: 295 TATAMEQLTATVRQNAENARQASELAISASAVAAQGGKVVDEVVLTMEAINASSLKIVDI 354 TA+AME+LTATV+QNA+NARQA++LA SAS +A QGG VV +VV TME I SS +I DI Sbjct: 302 TASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIADI 361 Query: 355 ISVIDGIAFQTNILALNAAVEAX-AGEQGRGFAVVASEVRSLAQRSATAAKEIKELIQDS 413 ISVIDGIAFQTNILALNAAVEA AGEQGRGFAVVASEVRSLAQRSA+AAKEIK+LI DS Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDS 421 Query: 414 VDKIGAGGRLVTEAGSTMAQVVTSVGRVTDIVSEISAASTEQSQGLEQINQAIGAMDEVT 473 V+K+GAG +LV AG+TM++VV SV RVTD+V+EISAAS EQS G+E+IN+AI MDEVT Sbjct: 422 VEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVT 481 Query: 474 QQNAALVEQAAAASQSLQEQAVQLAGAVQVFKLDR 508 QQNAALVE+AAAA+QSLQ+QA +L+ V VFKL R Sbjct: 482 QQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQR 516 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 376 bits (966), Expect = e-105, Method: Compositional matrix adjust. Identities = 251/511 (49%), Positives = 330/511 (64%), Gaps = 11/511 (2%) Query: 3 IAKKLYLLIIAVIAGLCALAALSIYQSYRVSAAAGYSTHNTVPSILALDEAIESVYAIRL 62 IA KL L V+ L SI Q ++V+ AA N +PSI +L++ ++ +R Sbjct: 9 IATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMKVALSRVRA 68 Query: 63 NVARYFIEPTTRDKIFPVIEALHDKVQAAFLKFEKEC---ISDATDAKMLEQDRAAFADY 119 N A+ + + VI L +K A + K+ IS+ + + A + Sbjct: 69 NQAQLALYDGDEKQSSAVI-GLMNKNLEALAEARKQYTGQISEPGEKALFPGVNARIDKF 127 Query: 120 EKARQQTLAFVDAGQANELQRAREELLVPAGNR---LMKALIEHKQYNAQLGREGMENAA 176 TLA V AG+ +E +R LL PA L+ L + Q N + +A Sbjct: 128 IALHGDTLAAVRAGKLDEAKRL---LLGPAFENYLSLLNDLDKLAQVNLDGSVQSTRSAE 184 Query: 177 SILESSIVIIVGVSLLIGTLVVGLSLLLVRMIATSLRHATHVADAISRYDLTSKIEHAAR 236 + + + V +V + + + L+L + R+IAT LR A A I+ DLT+ I + Sbjct: 185 TTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADITARSD 244 Query: 237 DEIGHLMQALGRMNDSLRKVMGGVGDSTGTIQVAAREIATGNLDLSSRTESQAGSLEETA 296 DE G L AL MN SLR+++ V T I A+ +I++GNLDLSSRTE QA SLEETA Sbjct: 245 DETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSLEETA 304 Query: 297 TAMEQLTATVRQNAENARQASELAISASAVAAQGGKVVDEVVLTMEAINASSLKIVDIIS 356 +AME+LT+TVRQNAENARQA++LA+SAS +A +GGKVV +V+ TM +I+ASS KIVDIIS Sbjct: 305 SAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIVDIIS 364 Query: 357 VIDGIAFQTNILALNAAVEAX-AGEQGRGFAVVASEVRSLAQRSATAAKEIKELIQDSVD 415 VID IAFQTNILALNAAVEA AGEQGRGFAVVA+EVRSLAQRSATAAKEIK LI +SV Sbjct: 365 VIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLIDNSVQ 424 Query: 416 KIGAGGRLVTEAGSTMAQVVTSVGRVTDIVSEISAASTEQSQGLEQINQAIGAMDEVTQQ 475 ++G G LV +AG T+++VV+SV RVTD++SEISAAS EQ+QG+EQ+NQAI MDEVTQQ Sbjct: 425 QVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVTQQ 484 Query: 476 NAALVEQAAAASQSLQEQAVQLAGAVQVFKL 506 NAALVE+AA+ASQSL QA +L+ V VF+L Sbjct: 485 NAALVEEAASASQSLSHQAQRLSELVGVFRL 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.128 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,259,254 Number of extensions: 43275 Number of successful extensions: 677 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 346 Number of HSP's successfully gapped: 70 Length of query: 538 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 448 Effective length of database: 1,193,720 Effective search space: 534786560 Effective search space used: 534786560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)