BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0051.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312208|ref|YP_003776300.1| assimilatory nitrate reductase ...   298   1e-82
gi|300310808|ref|YP_003774900.1| NAD-dependent formate dehydroge...    89   2e-19
gi|300313158|ref|YP_003777250.1| anaerobic dehydrogenase family ...    58   4e-10

>gi|300312208|ref|YP_003776300.1| assimilatory nitrate reductase
           large subunit [Herbaspirillum seropedicae SmR1]
          Length = 922

 Score =  298 bits (764), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 139/155 (89%), Positives = 149/155 (96%)

Query: 1   MNFAQTPLALAVATTSTTCPYCGVGCGVTASLKEDGRIGVQGDVQHPANFGRLCVKGSAL 60
           MN +QTPLALAVATTSTTCPYCGVGCGV+AS+K+DGRIG+QGD QHPANFGRLCVKGSAL
Sbjct: 1   MNLSQTPLALAVATTSTTCPYCGVGCGVSASMKDDGRIGIQGDAQHPANFGRLCVKGSAL 60

Query: 61  AETVDLDGRLLHPQVRDAQGALQQVSWDQALEQVASKFSAVIAEHGPDAVALYVSGQLLT 120
            ETVDLDGRLLHPQ+RDAQG LQQ++WDQAL+ VASKFSA+IAEHGPDAVALYVSGQLLT
Sbjct: 61  GETVDLDGRLLHPQLRDAQGQLQQLAWDQALDHVASKFSAIIAEHGPDAVALYVSGQLLT 120

Query: 121 EDYYIANKLMKGYIGSANIDTNSRLCMSSAVAGHS 155
           EDYYIANKLMKGYIGSANIDTNSRLCMSSAVAGH 
Sbjct: 121 EDYYIANKLMKGYIGSANIDTNSRLCMSSAVAGHK 155


>gi|300310808|ref|YP_003774900.1| NAD-dependent formate
           dehydrogenase subunit alpha [Herbaspirillum seropedicae
           SmR1]
          Length = 957

 Score = 88.6 bits (218), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 1/142 (0%)

Query: 8   LALAVATTSTTCPYCGVGCGVTASLKEDGRIGVQGDVQHPANFGRLCVKGSALAETVDLD 67
           L  A  +  TTC YCGVGC   A +K +  + +       AN G  CVKG          
Sbjct: 237 LGQAEHSKVTTCAYCGVGCSFKAEMKGNEVVRMVPYKDGKANQGHSCVKGRFAWGYATHK 296

Query: 68  GRLLHPQVRDA-QGALQQVSWDQALEQVASKFSAVIAEHGPDAVALYVSGQLLTEDYYIA 126
            R+L+P +R +     ++VSW++AL   AS+F  + A+HG D++    S +   E+ Y+ 
Sbjct: 297 DRILNPMIRKSINDPWREVSWEEALSYAASEFRRIQAKHGKDSIGGITSSRCTNEETYLV 356

Query: 127 NKLMKGYIGSANIDTNSRLCMS 148
            KL++   G+ N+DT +R+C S
Sbjct: 357 QKLVRAAFGNNNVDTCARVCHS 378


>gi|300313158|ref|YP_003777250.1| anaerobic dehydrogenase family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 701

 Score = 57.8 bits (138), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 19  CPY-CGVGCGVTASLKEDGRIGVQGDVQHPANFGRLCVKGSALAETVDLDGRLLHPQVR- 76
           CP+ C   C +  ++K+     V+GD  HP   G LC K S  AE      RLLHP  R 
Sbjct: 10  CPHDCPDTCALLVTVKDGVATEVRGDPAHPPTAGVLCTKVSRYAERTYHPDRLLHPMRRV 69

Query: 77  --DAQGALQQVSWDQALEQVASKFSAVIAEHGPDAVALY 113
               +G  +++SWD+A+  +A +    IA   P A+  Y
Sbjct: 70  GKKGEGKFERISWDEAIATIAQRLGQ-IALRDPQAILPY 107


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 491,930
Number of extensions: 19478
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 3
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)