BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0045.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312202|ref|YP_003776294.1| hypothetical protein Hsero_2894...   292   8e-81
gi|300309896|ref|YP_003773988.1| Mg(2+) transport ATPase inner m...    83   1e-17
gi|300310393|ref|YP_003774485.1| Mg2+ transport ATPase [Herbaspi...    68   4e-13

>gi|300312202|ref|YP_003776294.1| hypothetical protein Hsero_2894
           [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score =  292 bits (748), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 144/163 (88%), Positives = 157/163 (96%)

Query: 1   MTDHLEIFYRLLFAMLIGCVIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMDFSLESDV 60
           MTD+LEIF+RLLFAMLIGC IGIDRNLRGKPTGMKTLGLVALGSALVTMAAM+F+L ++ 
Sbjct: 15  MTDYLEIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMNFALGAED 74

Query: 61  HSRDAVSRAIQGVITGIGFLGAGVIIHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWWRV 120
           H+RDAVSRAIQGVITGIGFLGAGVIIHEQ +EKVRGLTTAASIWVTAAVGIVCGAGWW+V
Sbjct: 75  HNRDAVSRAIQGVITGIGFLGAGVIIHEQWTEKVRGLTTAASIWVTAAVGIVCGAGWWQV 134

Query: 121 ALMATGLILTLFVVGRPLEHFLHRRWLRKTDDERADISAREED 163
           ALMATGLIL LFV+GRPLE FLHR+W+RK+DDERADISAREED
Sbjct: 135 ALMATGLILILFVIGRPLEQFLHRQWMRKSDDERADISAREED 177


>gi|300309896|ref|YP_003773988.1| Mg(2+) transport ATPase inner
           membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 225

 Score = 83.2 bits (204), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 6/143 (4%)

Query: 1   MTDHLEIFYRLLFAMLIGCVIGIDRNLRGKPTGMKTLGLVALGSALVTM-AAMDFS--LE 57
           M    E+  RL  + ++G +IGI+R       G++T  LV++GS L+ + +A  F+  L+
Sbjct: 1   MISATEVILRLTVSAVLGSLIGIERERLSWAAGLRTHMLVSVGSTLIMLVSAYGFANILQ 60

Query: 58  SDVHSRDAVSRAIQGVITGIGFLGAGVIIHEQRSEKVRGLTTAASIWVTAAVGIVCGAGW 117
           SD    D  SR    V++GIGFLGAG I+   R E +RGLTTAAS+W  AA+G+  G G 
Sbjct: 61  SDKVVLDP-SRMAAQVVSGIGFLGAGSIL--LRGEIIRGLTTAASLWTVAAIGLAVGGGM 117

Query: 118 WRVALMATGLILTLFVVGRPLEH 140
           +  A+  T ++L +    +PLE 
Sbjct: 118 YVAAVAGTFIVLLILAGMKPLER 140


>gi|300310393|ref|YP_003774485.1| Mg2+ transport ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score = 67.8 bits (164), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 85/143 (59%), Gaps = 10/143 (6%)

Query: 6   EIFYRLLFAMLIGCVIGIDRNLRGKPTGMKTLGLVALGSAL-VTMAAMDFSLESDVHSRD 64
           + F  L  A ++G +IG++R  R +  G++T  LVALG+A+ V MA      E  VH   
Sbjct: 14  DTFISLTAAFILGGLIGLERQYRQRTAGLRTNVLVALGAAVFVDMANRLAGHEGAVH--- 70

Query: 65  AVSRAIQGVITGIGFLGAGVIIHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWWRVALMA 124
                +  V++G+GFLGAGVI+ E+ +  VRG+ TAA++W +AAVG   GA     A++A
Sbjct: 71  ----VVAYVVSGVGFLGAGVIMREEGN--VRGINTAATLWGSAAVGAAAGADLILEAILA 124

Query: 125 TGLILTLFVVGRPLEHFLHRRWL 147
           T  +L    + RP+ + ++R+ L
Sbjct: 125 TIFVLAANTLLRPVVNTINRKPL 147


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 511,808
Number of extensions: 20969
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 3
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)