BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0043.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312200|ref|YP_003776292.1| AraC family transcription regul...   400   e-113

>gi|300312200|ref|YP_003776292.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  400 bits (1029), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/272 (74%), Positives = 228/272 (83%), Gaps = 2/272 (0%)

Query: 3   SDIAILPFAHGT--RPTLTRIRARHEQQLRQVFIGLASICHVRQGKKRMQWGHRHLLCGQ 60
           S  + LP AH T  RP L+RIR R EQQLRQVFIGLASICHVRQGKKR+QW HR+L CG 
Sbjct: 2   SSNSTLPPAHATNPRPVLSRIRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCGP 61

Query: 61  DVLVLIAAGTQVNVANLPKGGEYAADMVSLPPALIERFRLHYPGQGVQARDASAVSSVAQ 120
           + L+LIAAGTQ+NVANLP+ GEYAADMVSLP +LIERFRLHYPGQG  A    AVS+ A 
Sbjct: 62  EGLLLIAAGTQLNVANLPRNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVSTTAL 121

Query: 121 DADILRAWRHLQDCIREEAASELQCQAAEGLLLALSLRGAIGGLLRERGDAISHHIEQHL 180
             D LRAWRHL  C++E+AA ELQCQAAEGLLLALSL+GA   LLR+R DA+SH IEQ L
Sbjct: 122 APDTLRAWRHLHACMQEDAAPELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQL 181

Query: 181 LMLAPEERSLERVAEAFHCSVSTLRRRLAREQTGFRELLDKVQLGLALDQLQASSLPIAD 240
           LML PE RSLE++A + HCSVSTLRRRL REQTGFRELLDKVQLG AL+QLQASSL IAD
Sbjct: 182 LMLPPEHRSLEQIAASLHCSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIAD 241

Query: 241 IASACGYDSPSRFAMRFRQHYGISPSELRQTL 272
           IA+ CGYDSPSRFA+RFRQH+G+SPS+LRQTL
Sbjct: 242 IAARCGYDSPSRFAVRFRQHFGLSPSQLRQTL 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 809,012
Number of extensions: 30818
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)