BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0041.p
         (123 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312199|ref|YP_003776291.1| phospholipid-binding protein [H...   155   9e-40

>gi|300312199|ref|YP_003776291.1| phospholipid-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  155 bits (392), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 90/111 (81%), Gaps = 2/111 (1%)

Query: 1   MSFFRFSVATLALTFSALS--AHAADFTVTSRDIQDGKALSNAEVFNGFGCSGLNRSPQL 58
           M+  R ++A  ALTFSAL+  A AA+FT+TS DI +G++LS A+VFNGFGC GLN+SPQL
Sbjct: 1   MTLIRPTLAAAALTFSALTLPAQAAEFTLTSSDIAEGQSLSIAQVFNGFGCIGLNKSPQL 60

Query: 59  SWSNAPAGTKSFAVTVYDPDAPTGSGWWHWTVFNLPASTTSLPRGFHXPHR 109
           SWS APA TKSFA+TVYDPDAPTGSGWWHWTVFN+PAS  SLP G   P +
Sbjct: 61  SWSGAPADTKSFAITVYDPDAPTGSGWWHWTVFNIPASVRSLPAGATAPGK 111


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.132    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 392,128
Number of extensions: 16235
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 2
Length of query: 123
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 49
Effective length of database: 1,269,480
Effective search space: 62204520
Effective search space used: 62204520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)