BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0033.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312055|ref|YP_003776147.1| UDP-N-acetylglucosamine 2-epime...   152   4e-38
gi|300313505|ref|YP_003777597.1| UDP-N-acetylglucosamine 2-epime...   150   2e-37

>gi|300312055|ref|YP_003776147.1| UDP-N-acetylglucosamine
           2-epimerase [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score =  152 bits (384), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 126/388 (32%), Positives = 190/388 (48%), Gaps = 47/388 (12%)

Query: 7   SRPLRVLSIFGTRPEAIKMAPLVKALNA-EPAIESIVCATGQHKQ--MLAQVLELFAIEA 63
           S P R+L I G RP  +K+AP++ A +     +++++  TGQH    M  Q  E   I A
Sbjct: 2   SSPHRILCIVGARPNFMKIAPIMAAFSQLGERVQAVLLHTGQHYDVAMNHQYFEALGIPA 61

Query: 64  -DHNLDVMVPDQTLNGLSARLFAGIDQLLEQTRPDRVLVHGDTTTAMVAAMAAFHRRIPV 122
            D NL++          +A +    +  LEQ +P  VLV GD  + +  A+ A  + +PV
Sbjct: 62  PDINLEIGSGSHAQQ--TAAIMQHFEPALEQVQPAAVLVLGDINSTLACALVAVKKGVPV 119

Query: 123 GHVEAGLRTHDMHQPWPEEMNRRTIDVVSDLMFAPTAQSRRNLEAENLQG-KIVVTGNTV 181
            HVEAGLR++D  +  PEE+NR   D +SDL++   A + +NL  E +   ++   GN +
Sbjct: 120 VHVEAGLRSND--RSMPEEINRILTDQISDLLYTTEANALQNLTREGIAAERVRFVGNVM 177

Query: 182 IDALQMTVARIDADAGLRAQLDAALPSLLP---------ERRLLLVTGHRRENFGTGFLQ 232
           ID L+  +AR             +LP +L          ++   ++T HR  N       
Sbjct: 178 IDTLRHNLARA-----------ISLPQILATQGREDFRHDKGYAVLTLHRPSNVDDP--A 224

Query: 233 ICRALAQLAQ--RDDLQIVYPVHLNPNVRGPAMQELSGL------PHLHLIEPLDYLQFV 284
           + RAL +  +     L +V+P+H  P  RG  M E  GL      P +  + P+ YL+ +
Sbjct: 225 VLRALLETVRTISATLPVVFPLH--PRTRG--MIEKFGLAGLIDIPQILQLPPMGYLEML 280

Query: 285 RLMQRAHVILTDSGGVQEEAPALGKPVLVMRDVTERPEAVAAGTVQLVGTDTGRIVDTVA 344
            LM+ A + LTDSGG+QEE  ALG P + +R  TERP  V  GT  L G D   I+   A
Sbjct: 281 GLMRDARLALTDSGGIQEETTALGVPCVTLRHNTERPITVEQGTNTLAGNDPQAILAIFA 340

Query: 345 TLLSEDRLWRSFARKQNPYGDGQACARI 372
            ++         A +   + DG A  RI
Sbjct: 341 EVMEHG----GKAGRIPEFWDGHAAERI 364


>gi|300313505|ref|YP_003777597.1| UDP-N-acetylglucosamine
           2-epimerase [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  150 bits (379), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 183/350 (52%), Gaps = 28/350 (8%)

Query: 10  LRVLSIFGTRPEAIKMAPLVKALNAEPAIESIVCATGQHKQMLAQVLELFAIEADHNLDV 69
           L+V++I GTRPE IKM+ ++  L+     + I+  TGQ+     ++ +LF      +L +
Sbjct: 2   LKVMTIVGTRPELIKMSRVIAELDQHT--QHILVHTGQNYDY--ELNQLFF----EDLAI 53

Query: 70  MVPDQTLNGLS-------ARLFAGIDQLLEQTRPDRVLVHGDTTTAMVAAMAAFHRRIPV 122
             PD  L  +        AR+    D+++E+ +PD VL++GDT + + A ++A  R+IPV
Sbjct: 54  RKPDHFLEAVGVNAAQTIARVIEKSDEVMEKEKPDAVLLYGDTNSCL-AVISAKRRKIPV 112

Query: 123 GHVEAGLRTHDMHQPWPEEMNRRTIDVVSDLMFAPTAQSRRNLEAENLQGK-IVVTGNTV 181
            H+EAG R  D  Q  PEE+NR+ +D +SD+    T  +RR L AE ++ + I+ TG+ +
Sbjct: 113 FHMEAGNRCFD--QRVPEELNRKVLDHLSDINLVLTEHARRYLIAEGVRPETIIKTGSHM 170

Query: 182 IDALQMTVARIDADAGLRAQLDAALPSLLPERRLLLVTGHRRENFGT--GFLQICRALAQ 239
            + L   + +I +        D      L + R  +V+ HR EN  T    + +   L  
Sbjct: 171 REVLDHYMPKIQSS-------DILSRMGLEQGRYFIVSAHREENVDTPENLIDMVETLNA 223

Query: 240 LAQRDDLQIVYPVHLNPNVRGPAMQELSGLPHLHLIEPLDYLQFVRLMQRAHVILTDSGG 299
           LAQ+  + ++   H     R  A+   +    +  ++P  +  +V+L   A  +++DSG 
Sbjct: 224 LAQQYQVPVIVSTHPRTQKRLDALNIGNLDSRIQFLKPFGFCDYVKLQMEALCVVSDSGT 283

Query: 300 VQEEAPALGKPVLVMRDVTERPEAVAAGTVQLVGTDTGRIVDTVATLLSE 349
           + EE   L  P + +R+  ERPE +  GT+ + G    R++D VA ++++
Sbjct: 284 ITEEGSLLNLPAVTIRNAHERPEGMDVGTLIMAGLKKDRVLDAVAVIIAQ 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,171,803
Number of extensions: 46593
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)