BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0030.p
         (164 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312198|ref|YP_003776290.1| effector of murein hydrolase Lr...   171   4e-44

>gi|300312198|ref|YP_003776290.1| effector of murein hydrolase LrgA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score =  171 bits (432), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 92/116 (79%), Positives = 100/116 (86%), Gaps = 4/116 (3%)

Query: 49  VFQCLGEGTAQLLGLPIPGPVIGMLMLLIAFLSSSRLAQLMEPTSWGILQHLSLLFVPAG 108
           +FQCLGEG AQLLGLP+PGPVIGML LL++FL+  RLA LME TSWGILQHLSLLFVPAG
Sbjct: 11  IFQCLGEGAAQLLGLPVPGPVIGMLFLLLSFLAYPRLADLMEATSWGILQHLSLLFVPAG 70

Query: 109 VGVIAAAGQLKGDLPAIAVALVVSTVLAIAVGALVTNAAMKRFSAARQPDHDEESH 164
           VGV+AAAGQL+GDL AI VALVVSTVLAIAVGALVT AAMKR S   +P  DEES 
Sbjct: 71  VGVMAAAGQLQGDLAAIVVALVVSTVLAIAVGALVTQAAMKRLS---RP-ADEESR 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 479,546
Number of extensions: 16667
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 86
Effective length of database: 1,250,540
Effective search space: 107546440
Effective search space used: 107546440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)