BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0026.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312194|ref|YP_003776286.1| organic solvents resistance ABC...   563   e-162

>gi|300312194|ref|YP_003776286.1| organic solvents resistance ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 305

 Score =  563 bits (1451), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 276/305 (90%), Positives = 290/305 (95%)

Query: 1   METRAHHVLIGLFTILVALAALVFCLWLTKVGQDRDVDYYTVIFNEAVSGLSRGSPVQYS 60
           METRAHHVLIGLFTILVAL AL FCLWLTK GQDRDVDYYTVIFNEAVSGLSRGSPVQYS
Sbjct: 1   METRAHHVLIGLFTILVALGALGFCLWLTKAGQDRDVDYYTVIFNEAVSGLSRGSPVQYS 60

Query: 61  GIKVGDVVGLSLDPADPRKVRARIRVTGKAPIKEDTGAKLALAGITGTALIQLTNGSPES 120
           GIKVGDVVGLSLDPADPRKVRARIRV G+APIKEDTGAKLALAGITGTALIQLTNGSP+S
Sbjct: 61  GIKVGDVVGLSLDPADPRKVRARIRVVGRAPIKEDTGAKLALAGITGTALIQLTNGSPQS 120

Query: 121 PRLESKDGNDPIIIASPSPLSALLSNGEDLLSNVNEVLLNAKQFLAPENARRLNQTLAHL 180
           PRLESKDG+DP+IIASPSPLSALLSNGEDLL NVNEVL+NAKQFLAP+NARRLN TLAHL
Sbjct: 121 PRLESKDGSDPVIIASPSPLSALLSNGEDLLGNVNEVLINAKQFLAPDNARRLNATLAHL 180

Query: 181 EQLTDTLANQRGNVGTAMQELAAAARQANLAMQSANQLLATRGNDAMGNLQQAMRSLAAS 240
           E+LT TLA QR N G AMQELA AARQANLAMQSANQLL+TRGNDAM NLQQAMRSLAAS
Sbjct: 181 EELTSTLAAQRNNAGAAMQELAEAARQANLAMQSANQLLSTRGNDAMSNLQQAMRSLAAS 240

Query: 241 SQQIEKLIQQNQAALNNGAQGVAEIGPAITELRSTLASVRAISRKLESNPGAYLLGQDNL 300
           SQQ+E+LIQQNQAALNNGAQGVAEIGPAI ELR+TL+SVRA+SRKLESNPGAYLLG DN+
Sbjct: 241 SQQVERLIQQNQAALNNGAQGVAEIGPAIAELRATLSSVRAVSRKLESNPGAYLLGHDNV 300

Query: 301 QEFQP 305
           QEFQP
Sbjct: 301 QEFQP 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 753,816
Number of extensions: 26116
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)