BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0025.p (276 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC... 428 e-121 gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC... 181 5e-47 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 161 5e-41 gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 143 1e-35 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 139 3e-34 >gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 428 bits (1101), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/261 (88%), Positives = 243/261 (93%), Gaps = 5/261 (1%) Query: 1 MVTPAH-----DDQAVEAIIDVRGLRNQFGPQVVHDQLDLQVRRGEILGVVGGSGTGKSV 55 MV P H V+ II+VRGLRNQFG QVVH+QLDLQVRRGEILGVVGGSGTGKSV Sbjct: 1 MVRPQHAPATRGGDGVDPIIEVRGLRNQFGTQVVHEQLDLQVRRGEILGVVGGSGTGKSV 60 Query: 56 LLRSIVGLQRPAAGQVKVFGQDLSALSTEARSQYERRFGVLFQQGALFSSLTVLENIALP 115 LLRSIVGL RPAAG+V+VFGQDL+ALS+EARS YERRFGVLFQQGALFSSLTVLENIALP Sbjct: 61 LLRSIVGLLRPAAGEVRVFGQDLTALSSEARSGYERRFGVLFQQGALFSSLTVLENIALP 120 Query: 116 LTEYGGLDADEARGVSAMKLALAGLPIAAGDKTPAELSGGMIKRAALARALALDPDILFL 175 LTEYGGL+ADEARGV+AMKLALAGLPIAAGDK PA LSGGMIKRAALARALALDPDILFL Sbjct: 121 LTEYGGLNADEARGVAAMKLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFL 180 Query: 176 DEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRVLVADR 235 DEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAICDR+AVLS++RVLVADR Sbjct: 181 DEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAICDRIAVLSSRRVLVADR 240 Query: 236 IEAVAAFDDPWIRQYFQGPRG 256 IEAVAA+DD WIRQYFQGPRG Sbjct: 241 IEAVAAYDDAWIRQYFQGPRG 261 >gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 181 bits (460), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 99/214 (46%), Positives = 138/214 (64%), Gaps = 1/214 (0%) Query: 39 RGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKVFGQDLSALSTEARSQYERRFGVLFQ 98 RG+++ V+GGSG+GK+ +LR I G RP G+V+V G+++ L+T+ R+ G+LFQ Sbjct: 5 RGKVVAVMGGSGSGKTTILRLIGGQLRPQQGKVEVDGENVPDLATKQLFLLRRKMGMLFQ 64 Query: 99 QGALFSSLTVLENIALPLTEYGGLDADEARGVSAMKLALAGLPIAAGDKTPAELSGGMIK 158 GALF+ +TV +N+A PL E+ LD R + MKL GL AA K PAE+SGGM + Sbjct: 65 NGALFTDMTVFDNVAFPLREHTDLDETLIRDLVLMKLNAVGLRNAASLK-PAEISGGMAR 123 Query: 159 RAALARALALDPDILFLDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAI 218 R ALARA+ALDP ++ DEP AGLDPIS LI L DALG T LV+HD++ +AI Sbjct: 124 RVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNESFAI 183 Query: 219 CDRVAVLSAKRVLVADRIEAVAAFDDPWIRQYFQ 252 D V LSA +++ E + + DP++RQ+ Sbjct: 184 ADHVYFLSAGKIVAQGTPEELRSSTDPYVRQFVH 217 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 161 bits (408), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 142/232 (61%), Gaps = 4/232 (1%) Query: 14 IIDVRGLRNQFGPQVVHDQLDLQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKV 73 +I+++ + +FG ++DL +R+GEI G++G SG GKS L+R++ L RP +G++ + Sbjct: 1 MIEIQAVTQRFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 Query: 74 FGQDLSALSTEARSQYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLDADEARGVSAM 133 GQDL++LS + R G++FQ L SS +V +NIALPL G A+ A V + Sbjct: 61 DGQDLTSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPL 120 Query: 134 KLALAGLPIAAGDKTPAELSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRL 193 L L GL A D+ PA++SGG +R +ARALA DP +L DE T+ LDP + + L Sbjct: 121 -LELVGLT-ALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILEL 178 Query: 194 ILTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRVLVADRIEAVAAFDDP 245 + + LGLT+ L+TH ++ + ICDRVAV+ A +V+ ++ E + F P Sbjct: 179 LRKINKELGLTIVLITHQMEVIKQICDRVAVMEAGQVI--EQGEVLDVFRQP 228 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 143 bits (361), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 78/193 (40%), Positives = 120/193 (62%), Gaps = 1/193 (0%) Query: 33 LDLQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKVFGQDLSALSTEARSQYERR 92 ++L + +GE+ G++G SG GKS L+R++ L+RP +G+V + G+D++ L EA +R Sbjct: 24 INLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGEDITGLGHEALLGLRQR 83 Query: 93 FGVLFQQGALFSSLTVLENIALPLTEYGGLDADEARGVSAMKLALAGLPIAAGDKTPAEL 152 G++FQ L ++ TV +NI PL G +E L L GL A D+ P++L Sbjct: 84 VGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAARVDELLQLVGLD-AHRDQYPSQL 142 Query: 153 SGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDL 212 SGG +R +ARALA P +L DE T+ LDP + + RL+L + LGLT+ L+TH++ Sbjct: 143 SGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSILRLLLEINRKLGLTIVLITHEM 202 Query: 213 DTLYAICDRVAVL 225 + + +ICDRVAVL Sbjct: 203 EVIRSICDRVAVL 215 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 139 bits (349), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 131/250 (52%), Gaps = 18/250 (7%) Query: 25 GPQVVHDQLDLQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKVFGQDLSALSTE 84 GP +DL++ G I G++G SG GKS LLR+I L+RP +G+V+V DL+ L Sbjct: 53 GPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDET 112 Query: 85 ARSQYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLDADEARGVSAMKLALAGLPIAA 144 RR G++FQ L ++ TV +NIALPL G A + V + LAL GL A Sbjct: 113 QLVALRRRIGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHEL-LALVGLQDKA 171 Query: 145 GDKTPAELSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRLILTLRDALGLT 204 D P LSGG +R +ARALA P+IL DE T+ LDP + + +L+ + LG+T Sbjct: 172 -DSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGIT 230 Query: 205 VFLVTHDLDTLYAICDRVAVLSAKRVLVADRIEAVAAFDDPWIRQYFQGPRGRAASQAAL 264 + L+TH++ + I DRV VL R VA + W Q F P+ AA Sbjct: 231 IILITHEMSVIREIADRVLVLEQGR---------VAELGEVW--QVFGKPQ-----HAAT 274 Query: 265 RASATPTHQG 274 RA P G Sbjct: 275 RALLAPLQHG 284 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 777,052 Number of extensions: 29162 Number of successful extensions: 472 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 269 Number of HSP's successfully gapped: 146 Length of query: 276 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 192 Effective length of database: 1,222,130 Effective search space: 234648960 Effective search space used: 234648960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)