BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0024.p
         (377 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312192|ref|YP_003776284.1| organic solvents resistance ABC...   659   0.0  
gi|300313364|ref|YP_003777456.1| organic solvents resistance ABC...    80   3e-16

>gi|300312192|ref|YP_003776284.1| organic solvents resistance ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/377 (87%), Positives = 350/377 (92%)

Query: 1   LNNAATFRLEPSSPPVLHVEGDWTLRNYRALSHQIAQQRPPVDDQLVLTFSALTAFDTVG 60
           L+N A+FRL+ +SPPVLHVEGDWTLRNYRALS QIAQ RP + +Q VL FSAL+AFDTVG
Sbjct: 4   LDNNASFRLDSASPPVLHVEGDWTLRNYRALSRQIAQARPALGEQTVLEFSALSAFDTVG 63

Query: 61  AKLLVDLLGVSAALRQTGEDSNLPRAWRGLLAAVAEAKAIAMPKAAPPPQAWITDMLERA 120
           AKLLVDLLGV AALRQT  DS L  AWR LLA VAEAKAIAMPK APP QAWITDMLER 
Sbjct: 64  AKLLVDLLGVPAALRQTQADSTLAPAWRALLAVVAEAKAIAMPKPAPPRQAWITDMLERV 123

Query: 121 GVATLNLRACSRGLLGFAGLCLQTLAASFWRPSRWRFTGVVAQVEQTGLDAVPIVSLLTF 180
           G ATL+LRAC+ GLLGF GLCLQTL +SFWRPSRWR T VVAQ+EQTGLDAVPIVSLLTF
Sbjct: 124 GAATLSLRACALGLLGFMGLCLQTLLSSFWRPSRWRVTAVVAQIEQTGLDAVPIVSLLTF 183

Query: 181 MVGAVVAFLGATVLADFGASLYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMK 240
           MVGAVVAFLGATVLA+FGAS+YTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMK
Sbjct: 184 MVGAVVAFLGATVLANFGASIYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMK 243

Query: 241 ANEEIDAIRALGLDPINLLVLPRIIALLISMPLLTFIAMMSGLFGGAMVCALSLDISPTM 300
           ANEEIDAIRALGLDPI LLVLPR+IALL++MP LTFIAM+SGLFGGAMVCALSLDISPTM
Sbjct: 244 ANEEIDAIRALGLDPIKLLVLPRLIALLVAMPALTFIAMLSGLFGGAMVCALSLDISPTM 303

Query: 301 FLSLLQQDVGIRHFVLGMVKAPLFAFVIAIIGCNEGFKVSGSAQSVGQHTTSSVVQSIFV 360
           FLSLLQQDVGIRHF+LGMVKAPLFAFV+A+IGCNEGFKVSGSAQSVGQHTTSSVVQSIFV
Sbjct: 304 FLSLLQQDVGIRHFILGMVKAPLFAFVVAVIGCNEGFKVSGSAQSVGQHTTSSVVQSIFV 363

Query: 361 VILLDALAALFFMEMGW 377
           VILLDALAALFFMEMGW
Sbjct: 364 VILLDALAALFFMEMGW 380


>gi|300313364|ref|YP_003777456.1| organic solvents resistance ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 259

 Score = 79.7 bits (195), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 135 LGFAGLCLQT-LAASFWRPSRWRFTGVVAQVEQTGLDAVPIVSLLTFMVGAVVAFLGATV 193
           +GFAG    + L +S     R R   +  Q+   G  ++ I+++    VG V+   G   
Sbjct: 20  VGFAGRMFASMLGSSLGLLRRPRL--ITDQIHFIGNYSLVIIAVSGLFVGFVLGLQGYYT 77

Query: 194 LADFGASLYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMKANEEIDAIRALGL 253
           L  +G+      LVA S  RE   ++TA+L AGR  +S TA+IG MKA E++ A+  + +
Sbjct: 78  LNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEIGLMKAGEQLSAMEMMAV 137

Query: 254 DPINLLVLPRIIALLISMPLLTFIAMMSGLFGGAMVCALSLDISPTMFLSLLQQDVGIRH 313
           +P+  +V PR  A +I+MP+L  I    G+ GG +V  L + +    F S +Q  V + +
Sbjct: 138 NPLQRVVAPRFWAGVIAMPVLAAIFSAVGVIGGYVVGVLLIGVDEGAFWSQMQGGVDVWN 197

Query: 314 FVL-GMVKAPLFAFVIAIIGCNEGFKVSGSAQSVGQHTTSSVV 355
            +  G++K+ +F   +  +   +G++   + + V + TT +VV
Sbjct: 198 DIANGVLKSVVFGVAVTFVALFQGYEAKPTPEGVARATTRTVV 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,051,736
Number of extensions: 41169
Number of successful extensions: 234
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,207,925
Effective search space: 350298250
Effective search space used: 350298250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)