BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0023.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312191|ref|YP_003776283.1| outer membrane porin [Herbaspir...    75   1e-15
gi|300310328|ref|YP_003774420.1| porin signal peptide protein [H...    52   7e-09

>gi|300312191|ref|YP_003776283.1| outer membrane porin
           [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score = 75.1 bits (183), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 8/85 (9%)

Query: 27  VTVYGVIDMSLVYTSKVGAGNNSRVSVDSGDAMASRIGFRGQSFXAD-----WRPSSSWK 81
           VTVYGVIDMSLVYTSKVG  N SR S+DSGDAMASRIG RG+    D     ++  + + 
Sbjct: 26  VTVYGVIDMSLVYTSKVGPDNGSRASLDSGDAMASRIGLRGREELGDGLAAIFQLETGFA 85

Query: 82  TDSPLTTVP---WPRRAACSTASRW 103
            D      P   + R++    A R+
Sbjct: 86  GDDGAMATPGTLFDRKSVVGLAGRF 110


>gi|300310328|ref|YP_003774420.1| porin signal peptide protein
          [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score = 52.4 bits (124), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 1  MKKLVFTLSALGLLNASQCAQAQTSSVTVYGVIDMSLVYTSKV---GAGNNSRVSVDSGD 57
          MKK +  L+ LG    +  A AQ+SS+T+YG ID SL YT+K+   G    S  +V+SG 
Sbjct: 1  MKKSLLALAVLGAF--AGAAHAQSSSITIYGAIDASLTYTNKIATDGKNTGSLTAVESGL 58

Query: 58 AMASRIGFRG 67
             SR+G +G
Sbjct: 59 VKGSRLGIKG 68


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.123    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 295,789
Number of extensions: 9418
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 4
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)