BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0018.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312824|ref|YP_003776916.1| plant photosystem II stability/...   541   e-155
gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum ...   313   1e-86

>gi|300312824|ref|YP_003776916.1| plant photosystem II
           stability/assembly factor protein [Herbaspirillum
           seropedicae SmR1]
          Length = 331

 Score =  541 bits (1393), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/294 (90%), Positives = 281/294 (95%)

Query: 38  RSDAHALHNMMLGATRAGSRIVAVGAYGYIILSDDGGASYRQADKVPVDTTLTTVSFAGT 97
           R+DAHALHNMMLGA RAGSRIVAVGAYGYIILSDDGGASYRQAD+VPVDTTLT+VSFA  
Sbjct: 38  RTDAHALHNMMLGAARAGSRIVAVGAYGYIILSDDGGASYRQADQVPVDTTLTSVSFADA 97

Query: 98  EQGWAAGHGGVILHTADGGKTWALQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHTRD 157
            QGWAAGHGGVILHTADGGKTWALQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHT+D
Sbjct: 98  SQGWAAGHGGVILHTADGGKTWALQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHTQD 157

Query: 158 GGKSWQQVKLPTAPGQQRGDLNLLHIFPGRDGALFVSVEQGVLYRSLDGGRHWEALATGS 217
           GGKSWQQVKLP APGQQR DLNLLHIFPGRDGALFV+ EQGVLYRS DGG+HWEALATG+
Sbjct: 158 GGKSWQQVKLPAAPGQQRADLNLLHIFPGRDGALFVAAEQGVLYRSRDGGQHWEALATGT 217

Query: 218 KASLWSGVVTASGAIIVGGLGGKLLRSEDGGQHWQVLASPTSGSITALRSEGNQVMASSL 277
           KASLWSGV TASGAI+VGGLGGKLLRS+DGGQHWQV+ASPTSGSITALRSEGNQVMASSL
Sbjct: 218 KASLWSGVSTASGAIVVGGLGGKLLRSDDGGQHWQVIASPTSGSITALRSEGNQVMASSL 277

Query: 278 SGSLLVSEDDGRQWRIKAEARDALTTLELQDGRAERPIAYGKGGQAKLEASVTR 331
           SG+LL S+DDGRQWRIKA ARDALTTLELQ+GRAERP+AYGKGGQAKLE S +R
Sbjct: 278 SGALLASDDDGRQWRIKATARDALTTLELQEGRAERPLAYGKGGQAKLEVSASR 331


>gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 327

 Score =  313 bits (802), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/313 (53%), Positives = 210/313 (67%), Gaps = 3/313 (0%)

Query: 13  LALLAGGVSHGAFAQAGAAVTLSPARSDAHALHNMMLGATRAGSRIVAVGAYGYIILSDD 72
           L L   G S  A AQ    V +  A +D  A   MML A  AG R+VAVGA G +ILSDD
Sbjct: 8   LWLALAGCSTLAAAQGMEPVPVRAAVADRFADRAMMLDAALAGERVVAVGARGEVILSDD 67

Query: 73  GGASYRQADKVPVDTTLTTVSFAGTEQGWAAGHGGVILHTADGGKTWALQRSDTSVDQPL 132
           GG  +RQA +VPVD TLT VSF   ++GWA GHGGV++HTADGG+TW LQRS T VDQPL
Sbjct: 68  GGRQWRQARQVPVDFTLTAVSFVDDKEGWAVGHGGVVIHTADGGETWQLQRSATDVDQPL 127

Query: 133 FSIWFANANEGWAAGLWSLLLHTRDGGKSWQQVKLPTAPGQQRGDLNLLHIFPGRDGALF 192
           F+++F +   GWAAGLWSLLL T DGGK+W  + LP A G +R DLNLL  FPG    L+
Sbjct: 128 FTVYFRDREHGWAAGLWSLLLQTEDGGKTWTTLHLPVAAGSKRSDLNLLRFFPGSGDTLY 187

Query: 193 VSVEQGVLYRSLDGGRHWEALATGSKASLWSGVVT-ASGAIIVGGLGGKLLRSEDGGQHW 251
           ++ EQG L+RS D G+HW+ LATGSKASLWSG V   +GA+IV GLGGKLLRS DGG  W
Sbjct: 188 LAAEQGTLFRSTDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGGKLLRSTDGGSQW 247

Query: 252 QVLASPTSGSITALRSEGNQVMASSLSGSLLVSEDDGRQWRIKAEARDALTTLELQDGRA 311
           Q +A PTSGSIT +++    + A+SL G +L S D+G  W++   A   LTT+ +   R 
Sbjct: 248 QTVALPTSGSITRVQATPGLLTAASLEGKILQSRDEGVSWQVLWSAPQGLTTILVN--RL 305

Query: 312 ERPIAYGKGGQAK 324
            + + + K G  K
Sbjct: 306 GQVLPFSKEGVLK 318


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,204,037
Number of extensions: 57325
Number of successful extensions: 257
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)